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The Top 15 Bioinformatics Wdl Open Source Projects

Open source projects categorized as Bioinformatics Wdl
Categories > Data Processing > Bioinformatics
Categories > Wdl
Cromwell ⭐ 944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
total releases 37most recent commit 3 months ago
Wdl ⭐ 706
Workflow Description Language - Specification and Implementations
total releases 20most recent commit 3 months ago
Dockstore ⭐ 113
Our VM/Docker sharing infrastructure and management component
most recent commit 3 months ago
Tasks ⭐ 78
A collection of reusable WDL tasks. Category:Other
most recent commit 8 months ago
Tibanna ⭐ 68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
dependent packages 1total releases 280most recent commit 4 months agopypi tibanna} Downloads
Cromshell ⭐ 51
CLI for interacting with Cromwell servers
total releases 2most recent commit 6 months ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62most recent commit 8 months agopypi janis-pipelines.core} Downloads
Oliver ⭐ 36
An opinionated Cromwell orchestration manager.
total releases 27most recent commit a year ago
Workflows ⭐ 28
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
most recent commit 3 months ago
Wdldoc ⭐ 26
Create WDL documentation using Markdown.
total releases 14most recent commit a year ago
Hotsub ⭐ 23
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
total releases 22most recent commit 5 years ago
Sv Pipeline ⭐ 21
Pipeline for structural variation detection in cohorts
most recent commit 4 years ago
Pumbaa ⭐ 14
Command-line interface for Cromwell server
total releases 25most recent commit 5 months ago
Clihelpparser ⭐ 13
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
most recent commit 3 years ago
C Bird ⭐ 7
🦠 Bacterial Identification and Antimicrobial Resistance 💊
most recent commit 5 months ago
The 2 Most Depended On Bioinformatics Wdl Open Source Projects
The 9 Latest Releases In Bioinformatics Wdl Open Source Projects
Cromshell ⭐ 51
CLI for interacting with Cromwell servers
total releases 2latest release October 17, 2023most recent commit 6 months ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
Pumbaa ⭐ 14
Command-line interface for Cromwell server
total releases 25latest release June 06, 2023most recent commit 5 months ago
Oliver ⭐ 36
An opinionated Cromwell orchestration manager.
total releases 27latest release November 20, 2021most recent commit a year ago
Wdldoc ⭐ 26
Create WDL documentation using Markdown.
total releases 14latest release September 10, 2021most recent commit a year ago
Wdl ⭐ 706
Workflow Description Language - Specification and Implementations
total releases 20latest release January 25, 2016most recent commit 3 months ago
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