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The Top 23 Visualization Bioinformatics Open Source Projects

Open source projects categorized as Visualization Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > User Interface > Visualization
Dnafeaturesviewer ⭐ 500
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30most recent commit 6 months agopypi dna-features-viewer} Downloads
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13most recent commit 4 months agopypi pycirclize} Downloads
Awesome Cheminformatics ⭐ 473
A curated list of Cheminformatics libraries and software.
most recent commit a year ago
Clinker ⭐ 452
Gene cluster comparison figure generator
dependent packages 2total releases 29most recent commit 9 months agopypi clinker} Downloads
Anvio ⭐ 396
An analysis and visualization platform for 'omics data
most recent commit 3 months ago
Quast ⭐ 327
Genome assembly evaluation tool
most recent commit 7 months ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43most recent commit 3 months ago
Sequenceserver ⭐ 259
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
total releases 68most recent commit 3 months ago
Ribbon ⭐ 249
A genome browser that shows long reads and complex variants better
most recent commit a year ago
Teachingdemos ⭐ 216
Bioinformatics related demos and tutorials using the R programming language
most recent commit a year ago
Hicexplorer ⭐ 197
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
most recent commit 5 months ago
Jbrowse Components ⭐ 182
Source code for JBrowse 2, a modern React-based genome browser
dependent packages 26total releases 79most recent commit 21 days agonpm @jbrowse/core} Downloads
Pycomplexheatmap ⭐ 182
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
total releases 37most recent commit 5 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23most recent commit 6 months agopypi pygenomeviz} Downloads
Indra ⭐ 154
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
dependent packages 7total releases 29most recent commit 3 months agopypi indra} Downloads
Genome Spy ⭐ 150
A visualization grammar and GPU-accelerated toolkit for genomic data
dependent packages 3total releases 41most recent commit 3 months agonpm @genome-spy/core} Downloads
Itol.toolkit ⭐ 137
Helper Functions for Interactive Tree Of Life (iTOL)
most recent commit 3 months ago
Mutscan ⭐ 127
Detect and visualize target mutations by scanning FastQ files directly
most recent commit 2 years ago
Oreilly Animal Books For Python ⭐ 123
O‘REILLY animal books for Python
most recent commit 2 years ago
Sigminer ⭐ 119
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/
total releases 32most recent commit 4 months ago
Nightingale ⭐ 102
Data visualisation web components for the life sciences.
dependent packages 21total releases 42most recent commit 8 months agonpm data-loader} Downloads
Cwl Svg ⭐ 72
A library for generating an interactive SVG visualization of CWL workflows
dependent packages 4total releases 74most recent commit a year agonpm cwl-svg} Downloads
Startapp ⭐ 71
The START App: R Shiny Transcriptome Analysis Resource Tool
most recent commit 3 years ago
The 10 Most Depended On Visualization Bioinformatics Open Source Projects
Jbrowse Components ⭐ 182
Source code for JBrowse 2, a modern React-based genome browser
dependent packages 26total releases 79latest release November 30, 2023most recent commit 21 days agonpm @jbrowse/core} Downloads
Dnafeaturesviewer ⭐ 500
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30latest release November 01, 2023most recent commit 6 months agopypi dna-features-viewer} Downloads
Nightingale ⭐ 102
Data visualisation web components for the life sciences.
dependent packages 21total releases 42latest release December 01, 2022most recent commit 8 months agonpm data-loader} Downloads
Bigwig Reader ⭐ 7
Typescript library for reading BigWig and BigBed files.
dependent packages 5total releases 32latest release July 16, 2020most recent commit a year agonpm bigwig-reader} Downloads
Cwl Svg ⭐ 72
A library for generating an interactive SVG visualization of CWL workflows
dependent packages 4total releases 74latest release January 17, 2023most recent commit a year agonpm cwl-svg} Downloads
Itolapi ⭐ 31
Python API for the Interactive Tree of Life (iTOL)
dependent packages 4total releases 20latest release January 15, 2023most recent commit 3 months agopypi itolapi} Downloads
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Genome Spy ⭐ 150
A visualization grammar and GPU-accelerated toolkit for genomic data
dependent packages 3total releases 41latest release November 24, 2023most recent commit 3 months agonpm @genome-spy/core} Downloads
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13latest release July 20, 2023most recent commit 4 months agopypi pycirclize} Downloads
The 10 Latest Releases In Visualization Bioinformatics Open Source Projects
Pycomplexheatmap ⭐ 182
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
total releases 37latest release November 30, 2023most recent commit 5 months ago
Jbrowse Components ⭐ 182
Source code for JBrowse 2, a modern React-based genome browser
dependent packages 26total releases 79latest release November 30, 2023most recent commit 21 days agonpm @jbrowse/core} Downloads
Genome Spy ⭐ 150
A visualization grammar and GPU-accelerated toolkit for genomic data
dependent packages 3total releases 41latest release November 24, 2023most recent commit 3 months agonpm @genome-spy/core} Downloads
Glue Genes ⭐ 7
glue for genomics and transcriptomics
total releases 7latest release November 22, 2023most recent commit 4 months ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Aniclustermap ⭐ 38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
total releases 5latest release November 07, 2023most recent commit 5 months ago
Dnafeaturesviewer ⭐ 500
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30latest release November 01, 2023most recent commit 6 months agopypi dna-features-viewer} Downloads
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
Cirrocumulus ⭐ 55
Bring your single-cell data to life
total releases 147latest release September 29, 2023most recent commit 5 months ago
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