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The Top 16 Bioinformatics Slurm Open Source Projects

Open source projects categorized as Bioinformatics Slurm
Categories > Data Processing > Bioinformatics
Categories > Slurm
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250most recent commit 3 months ago
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Smk Simple Slurm ⭐ 80
A simple Snakemake profile for Slurm without --cluster-config
most recent commit a year ago
Bionix ⭐ 66
Functional highly reproducible bioinformatics pipelines
most recent commit 4 months ago
Slurmr ⭐ 50
slurmR: A Lightweight Wrapper for Slurm
total releases 3most recent commit 6 months ago
Wochenende ⭐ 30
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
most recent commit 2 years ago
Bioinformaticsintroduction ⭐ 22
most recent commit 5 years ago
Assemblycomparator2 ⭐ 20
🦠📇 Compare prokaryotic genomic assemblies
most recent commit 3 months ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Informme ⭐ 15
An information-theoretic pipeline for methylation analysis of WGBS data
most recent commit 5 years ago
Longbow ⭐ 14
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
most recent commit 4 years ago
Phylotoast ⭐ 12
Tools for phylogenetic data analysis including visualization and cluster-computing support.
total releases 3most recent commit 2 years ago
Cpg_me ⭐ 10
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
most recent commit 2 years ago
Bioluigi ⭐ 9
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
total releases 20most recent commit 6 months ago
Canine ⭐ 6
A modular, high-performance computing solution to run jobs using SLURM
most recent commit 3 months ago
Ansible Slurm Climb ⭐ 5
Ansible playbook for installing SLURM based cluster on CLIMB (Cloud Infrastructure for Microbial Bioinformatics)
most recent commit 6 years ago
The 4 Latest Releases In Bioinformatics Slurm Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Bioluigi ⭐ 9
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
total releases 20latest release October 03, 2023most recent commit 6 months ago
Slurmr ⭐ 50
slurmR: A Lightweight Wrapper for Slurm
total releases 3latest release September 03, 2021most recent commit 6 months ago
Phylotoast ⭐ 12
Tools for phylogenetic data analysis including visualization and cluster-computing support.
total releases 3latest release September 19, 2014most recent commit 2 years ago
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