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The Top 21 Bioinformatics Single Cell Rna Seq Open Source Projects

Open source projects categorized as Bioinformatics Single Cell Rna Seq
Categories > Data Processing > Bioinformatics
Categories > Single Cell Rna Seq
Salmon ⭐ 661
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
most recent commit 8 months ago
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4most recent commit 3 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32most recent commit 4 months agopypi cellrank} Downloads
Diffxpy ⭐ 157
Differential expression analysis for single-cell RNA-seq data.
most recent commit a year ago
Swne ⭐ 100
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
most recent commit 9 months ago
Honeybadger ⭐ 94
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
most recent commit 3 years ago
Scarf ⭐ 83
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
dependent packages 1total releases 43most recent commit 3 months agopypi scarf} Downloads
Cell_blast ⭐ 74
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
total releases 8most recent commit 9 months ago
Cogaps ⭐ 53
Bayesian MCMC matrix factorization algorithm
most recent commit 3 months ago
Cello ⭐ 53
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
total releases 7most recent commit 10 months ago
Cell2cell ⭐ 44
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
most recent commit 5 months ago
Scaden ⭐ 40
Deep Learning based cell composition analysis with Scaden.
total releases 13most recent commit 3 years ago
Csbb Shiny ⭐ 28
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
most recent commit a year ago
Seuratv3wizard ⭐ 26
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
most recent commit 4 years ago
Stackeddae ⭐ 20
Stacked Denoising AutoEncoder based on TensorFlow
most recent commit 5 years ago
Muto_wilson_ncomm_2020 ⭐ 17
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
most recent commit a year ago
Splatter Paper ⭐ 15
Data and analysis for the Splatter paper
most recent commit 6 years ago
Toolchest Client Python ⭐ 13
Toolchest Python client
dependent packages 1total releases 84most recent commit a year agopypi toolchest-client} Downloads
Irescue ⭐ 8
A tool to quantify transposable elements expression in scRNA-seq
total releases 5most recent commit a year ago
Uncurl_app ⭐ 6
most recent commit 2 years ago
Scref ⭐ 5
A reference-based solution for single-cell analysis
most recent commit 4 years ago
The 3 Most Depended On Bioinformatics Single Cell Rna Seq Open Source Projects
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Toolchest Client Python ⭐ 13
Toolchest Python client
dependent packages 1total releases 84latest release January 26, 2023most recent commit a year agopypi toolchest-client} Downloads
The 8 Latest Releases In Bioinformatics Single Cell Rna Seq Open Source Projects
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4latest release December 04, 2023most recent commit 3 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Irescue ⭐ 8
A tool to quantify transposable elements expression in scRNA-seq
total releases 5latest release March 13, 2023most recent commit a year ago
Cell_blast ⭐ 74
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
total releases 8latest release February 08, 2023most recent commit 9 months ago
Toolchest Client Python ⭐ 13
Toolchest Python client
dependent packages 1total releases 84latest release January 26, 2023most recent commit a year agopypi toolchest-client} Downloads
Cello ⭐ 53
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
total releases 7latest release September 28, 2022most recent commit 10 months ago
Scaden ⭐ 40
Deep Learning based cell composition analysis with Scaden.
total releases 13latest release June 10, 2021most recent commit 3 years ago
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