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The Top 23 Bioinformatics Sequence Analysis Open Source Projects

Open source projects categorized as Bioinformatics Sequence Analysis
Categories > Data Processing > Bioinformatics
Categories > Sequence Analysis
Seqtk ⭐ 1,148
Toolkit for processing sequences in FASTA/Q formats
total releases 1most recent commit a year ago
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1most recent commit 2 years ago
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52most recent commit 3 months agopypi biotite} Downloads
Seqan3 ⭐ 373
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
most recent commit 3 months ago
Chromap ⭐ 166
Fast alignment and preprocessing of chromatin profiles
most recent commit 4 months ago
Kalign ⭐ 105
A fast multiple sequence alignment program.
total releases 1most recent commit 4 months ago
Readfq ⭐ 105
Fast multi-line FASTA/Q reader in several programming languages
most recent commit 5 years ago
Pyhmmer ⭐ 98
Cython bindings and Python interface to HMMER3.
dependent packages 15total releases 51most recent commit 3 months agopypi pyhmmer} Downloads
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18most recent commit 2 years agonuget BioFSharp} Downloads
Flexidot ⭐ 56
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
most recent commit 3 years ago
Bioalignments.jl ⭐ 51
Sequence alignment tools
most recent commit a year ago
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22most recent commit 6 months ago
Htstream ⭐ 48
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
most recent commit 10 months ago
Pymsaviz ⭐ 41
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
total releases 6most recent commit 7 months ago
Gfapy ⭐ 39
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
dependent packages 1total releases 16most recent commit 2 years agopypi gfapy} Downloads
Htsbox ⭐ 38
My experimental tools on top of htslib. NOT OFFICIAL!!!
most recent commit 3 years ago
Peptides.py ⭐ 36
Physicochemical properties, indices and descriptors for amino-acid sequences.
total releases 6most recent commit a year ago
Lightmotif ⭐ 28
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
dependent packages 3total releases 7most recent commit 4 months agocargo lightmotif} Downloads
Spacepharer ⭐ 28
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
most recent commit a year ago
Sabreur ⭐ 14
fast, reliable and handy demultiplexing tool for fastx files
most recent commit a year ago
Smof ⭐ 12
Explore and analyze biological sequence data
dependent packages 2total releases 12most recent commit a year agopypi smof} Downloads
Gluetools ⭐ 9
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
most recent commit 5 months ago
Pxblat ⭐ 8
PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT
most recent commit 3 months ago
The 7 Most Depended On Bioinformatics Sequence Analysis Open Source Projects
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 3 months agopypi biotite} Downloads
Pyhmmer ⭐ 98
Cython bindings and Python interface to HMMER3.
dependent packages 15total releases 51latest release October 29, 2023most recent commit 3 months agopypi pyhmmer} Downloads
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18latest release May 11, 2022most recent commit 2 years agonuget BioFSharp} Downloads
Lightmotif ⭐ 28
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
dependent packages 3total releases 7latest release August 31, 2023most recent commit 4 months agocargo lightmotif} Downloads
Smof ⭐ 12
Explore and analyze biological sequence data
dependent packages 2total releases 12latest release July 18, 2022most recent commit a year agopypi smof} Downloads
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22latest release October 30, 2023most recent commit 6 months ago
Gfapy ⭐ 39
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
dependent packages 1total releases 16latest release February 03, 2022most recent commit 2 years agopypi gfapy} Downloads
The 10 Latest Releases In Bioinformatics Sequence Analysis Open Source Projects
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22latest release October 30, 2023most recent commit 6 months ago
Pyhmmer ⭐ 98
Cython bindings and Python interface to HMMER3.
dependent packages 15total releases 51latest release October 29, 2023most recent commit 3 months agopypi pyhmmer} Downloads
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 3 months agopypi biotite} Downloads
Lightmotif ⭐ 28
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
dependent packages 3total releases 7latest release August 31, 2023most recent commit 4 months agocargo lightmotif} Downloads
Pymsaviz ⭐ 41
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
total releases 6latest release December 29, 2022most recent commit 7 months ago
Peptides.py ⭐ 36
Physicochemical properties, indices and descriptors for amino-acid sequences.
total releases 6latest release September 01, 2022most recent commit a year ago
Kalign ⭐ 105
A fast multiple sequence alignment program.
total releases 1latest release August 31, 2022most recent commit 4 months ago
Smof ⭐ 12
Explore and analyze biological sequence data
dependent packages 2total releases 12latest release July 18, 2022most recent commit a year agopypi smof} Downloads
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18latest release May 11, 2022most recent commit 2 years agonuget BioFSharp} Downloads
Gfapy ⭐ 39
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
dependent packages 1total releases 16latest release February 03, 2022most recent commit 2 years agopypi gfapy} Downloads
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