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The Top 22 Scala Bioinformatics Open Source Projects

Open source projects categorized as Scala Bioinformatics
Categories > Data Processing > Bioinformatics
Adam ⭐ 966
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
dependent packages 17total releases 14most recent commit 3 months ago
Cromwell ⭐ 944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
total releases 37most recent commit 3 months ago
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16most recent commit 3 months ago
Bioscala ⭐ 106
Bioinformatics for the Scala programming language
most recent commit 3 months ago
Genomicsdb ⭐ 88
High performance data storage for importing, querying and transforming variants.
dependent packages 2total releases 35most recent commit 3 months ago
Toolkit ⭐ 57
The MPI Bioinformatics Toolkit
most recent commit 4 months ago
Gor ⭐ 37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
most recent commit 4 months ago
Cannoli ⭐ 37
Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
dependent packages 1total releases 11most recent commit 4 months ago
Spark Tutorial ⭐ 34
Introduction to predictive modeling in Spark with applications in pharmaceutical bioinformatics
most recent commit 8 years ago
Conda Env Builder ⭐ 30
Build and maintain multiple custom conda environments all in one place.
total releases 1most recent commit a year ago
Scalabioalg ⭐ 25
Algorithms and tools for bioinformatics and life science informatics written in Scala
most recent commit 5 years ago
Discount ⭐ 14
Very large scale k-mer counting and analysis on Apache Spark.
total releases 6most recent commit a year ago
Gmql ⭐ 14
GMQL - GenoMetric Query Language
dependent packages 7total releases 2most recent commit 3 years ago
Genalgo ⭐ 13
A bioinformatics library for Scala
most recent commit 7 years ago
Spark Genome Alignment Demo ⭐ 13
An example of bioinformatics and bigdata tools can playing nicely together
most recent commit 8 years ago
Bbweb ⭐ 12
Biobank Web Application
most recent commit 2 years ago
Cvbio ⭐ 9
Artisanal 🤣 bioinformatics tools and pipelines in Scala
most recent commit 4 years ago
Pygmql ⭐ 9
Python Library for data analysis based on GMQL
total releases 16most recent commit 2 years ago
Db.rna16s ⭐ 8
A comprehensive, compact, and automatically curated 16S database
most recent commit 5 years ago
Convolutional Embedded Networks ⭐ 7
Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing
most recent commit 4 years ago
Msviz Backend ⭐ 6
A mass spectrometry visualization platform, developed by the PAF & Vital-IT, Swiss Institute of Bioinformatics.
most recent commit 6 years ago
Scalalabbioinf ⭐ 5
Bioinformatics using the ScalaLab environment
most recent commit 7 years ago
The 4 Most Depended On Scala Bioinformatics Open Source Projects
Gmql ⭐ 14
GMQL - GenoMetric Query Language
dependent packages 7total releases 2latest release July 04, 2018most recent commit 3 years ago
Genomicsdb ⭐ 88
High performance data storage for importing, querying and transforming variants.
dependent packages 2total releases 35latest release October 12, 2023most recent commit 3 months ago
Cannoli ⭐ 37
Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
dependent packages 1total releases 11latest release December 17, 2020most recent commit 4 months ago
The 9 Latest Releases In Scala Bioinformatics Open Source Projects
Genomicsdb ⭐ 88
High performance data storage for importing, querying and transforming variants.
dependent packages 2total releases 35latest release October 12, 2023most recent commit 3 months ago
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16latest release May 16, 2023most recent commit 3 months ago
Discount ⭐ 14
Very large scale k-mer counting and analysis on Apache Spark.
total releases 6latest release February 13, 2023most recent commit a year ago
Conda Env Builder ⭐ 30
Build and maintain multiple custom conda environments all in one place.
total releases 1latest release August 15, 2022most recent commit a year ago
Cannoli ⭐ 37
Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
dependent packages 1total releases 11latest release December 17, 2020most recent commit 4 months ago
Pygmql ⭐ 9
Python Library for data analysis based on GMQL
total releases 16latest release June 19, 2019most recent commit 2 years ago
Gmql ⭐ 14
GMQL - GenoMetric Query Language
dependent packages 7total releases 2latest release July 04, 2018most recent commit 3 years ago
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