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The Top 23 Bioinformatics Sam Open Source Projects

Open source projects categorized as Bioinformatics Sam
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11most recent commit a month agocargo hts-sys} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18most recent commit 3 years agopypi google-nucleus} Downloads
Sambamba ⭐ 552
Tools for working with SAM/BAM data
total releases 1most recent commit 8 months ago
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1most recent commit 2 years ago
Fastqp ⭐ 94
Simple FASTQ quality assessment using Python
most recent commit 3 years ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Hadoop Bam ⭐ 66
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
dependent packages 33total releases 17most recent commit 5 years ago
Simplesam ⭐ 55
Simple pure Python SAM parser and objects for working with SAM records
most recent commit 2 years ago
Biod ⭐ 43
A D library for computational biology and bioinformatics
total releases 5most recent commit 4 years ago
Ococo ⭐ 39
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
most recent commit 5 years ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44most recent commit 7 months agopypi fuc} Downloads
Xam.jl ⭐ 24
Parse and process SAM and BAM formatted files
most recent commit 3 months ago
Samql ⭐ 20
SQL-like query language for the SAM/BAM file format
most recent commit 7 months ago
Samstat ⭐ 20
SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
most recent commit 9 months ago
Hts Python ⭐ 18
pythonic wrapper for htslib
most recent commit 7 years ago
Edgecase ⭐ 13
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
most recent commit a year ago
Bgzfstreams.jl ⭐ 12
BGZF Stream
most recent commit 9 months ago
Fast5seek ⭐ 11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
total releases 2most recent commit a year ago
Libflagstats ⭐ 11
Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
total releases 5most recent commit 4 years ago
Bioparser ⭐ 9
C++ library for parsing several formats in bioinformatics
most recent commit a year ago
Tophat Recondition ⭐ 9
Post-processor for TopHat unmapped.bam files making them useable by downstream software.
most recent commit 5 years ago
Ruby Htslib ⭐ 7
HTSlib bindings for Ruby
total releases 19most recent commit 3 months ago
Cstag ⭐ 5
Python module to manipulate and visualize minimap2's cs tag
most recent commit 3 months ago
The 5 Most Depended On Bioinformatics Sam Open Source Projects
Bionode Sam ⭐ 5
Node.js wrapper for samtools.
dependent packages 4total releases 6latest release October 24, 2014most recent commit 7 years agonpm bionode-sam} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18latest release August 31, 2021most recent commit 3 years agopypi google-nucleus} Downloads
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 7 months agopypi fuc} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
The 10 Latest Releases In Bioinformatics Sam Open Source Projects
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 7 months agopypi fuc} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
Ruby Htslib ⭐ 7
HTSlib bindings for Ruby
total releases 19latest release May 17, 2023most recent commit 3 months ago
Sambamba ⭐ 552
Tools for working with SAM/BAM data
total releases 1latest release October 05, 2022most recent commit 8 months ago
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18latest release August 31, 2021most recent commit 3 years agopypi google-nucleus} Downloads
Samql ⭐ 20
SQL-like query language for the SAM/BAM file format
latest release May 30, 2021most recent commit 7 months ago
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1latest release March 03, 2021most recent commit 2 years ago
Libflagstats ⭐ 11
Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
total releases 5latest release November 08, 2019most recent commit 4 years ago
Biod ⭐ 43
A D library for computational biology and bioinformatics
total releases 5latest release June 01, 2019most recent commit 4 years ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
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