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The Top 23 Bioinformatics Rna Open Source Projects

Open source projects categorized as Bioinformatics Rna
Categories > Data Processing > Bioinformatics
Categories > Rna
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29most recent commit 4 months agopypi graphein} Downloads
Rnartist ⭐ 144
With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...
total releases 12most recent commit 5 months ago
Rna Tools ⭐ 129
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
total releases 110most recent commit 3 months ago
Ga4gh Server ⭐ 95
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
total releases 18most recent commit 6 years ago
R2dt ⭐ 53
Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
most recent commit 4 months ago
Intarna ⭐ 41
Efficient target prediction incorporating accessibility of interaction sites
most recent commit 3 months ago
Galaxy Rna Workbench ⭐ 38
Galaxy RNA workbench
most recent commit 5 years ago
Rna Playground ⭐ 34
Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
most recent commit 3 months ago
Tailfindr ⭐ 32
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
most recent commit a year ago
Rnartistcore ⭐ 25
A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.
most recent commit 4 months ago
Rnacentral Webcode ⭐ 25
RNAcentral website source code
most recent commit 5 months ago
Sequencework ⭐ 22
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
most recent commit 3 months ago
Aptasuite ⭐ 20
A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
most recent commit 2 years ago
Eltetrado ⭐ 17
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
dependent packages 1total releases 17most recent commit 3 months agopypi eltetrado} Downloads
Metarna ⭐ 17
Find target sites for the miRNAs in genomic sequences
total releases 6most recent commit 7 years ago
Pipernaseq ⭐ 16
A comprehensive pipeline for RNAseq data analysis
most recent commit 5 months ago
Eternabrain ⭐ 16
Deep learning to solve RNA design puzzles
most recent commit a year ago
Rna Science Toolbox ⭐ 16
A platform to do RNA science
most recent commit 3 years ago
Fr3d Python ⭐ 14
Python implementation of the FR3D software for searching and annotating RNA 3D structures
most recent commit 4 months ago
Rnalien ⭐ 14
RNAlien - unsupervised RNA family model construction
most recent commit 3 years ago
Fingernat ⭐ 12
Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
most recent commit 2 years ago
Seqshuffle.jl ⭐ 9
Shuffle the string sequences such that the k-mer frequency is preserved in each string
most recent commit a year ago
Parasor ⭐ 9
Parallel solution for local RNA secondary structure analysis
most recent commit a year ago
The 2 Most Depended On Bioinformatics Rna Open Source Projects
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
Eltetrado ⭐ 17
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
dependent packages 1total releases 17latest release May 12, 2022most recent commit 3 months agopypi eltetrado} Downloads
The 7 Latest Releases In Bioinformatics Rna Open Source Projects
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
Eltetrado ⭐ 17
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
dependent packages 1total releases 17latest release May 12, 2022most recent commit 3 months agopypi eltetrado} Downloads
Ga4gh Server ⭐ 95
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
total releases 18latest release December 15, 2021most recent commit 6 years ago
Metarna ⭐ 17
Find target sites for the miRNAs in genomic sequences
total releases 6latest release June 24, 2017most recent commit 7 years ago
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