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The Top 23 R Bioinformatics Rna Seq Open Source Projects

Open source projects categorized as R Bioinformatics Rna Seq
Categories > Data Processing > Bioinformatics
Categories > Rna Seq
Youtubetutorials ⭐ 180
most recent commit 4 months ago
Bioc Refcard ⭐ 170
Bioconductor cheat sheet
most recent commit 2 years ago
Rnaseq Workflow ⭐ 133
A repository for setting up a RNAseq workflow
most recent commit 7 years ago
Startapp ⭐ 71
The START App: R Shiny Transcriptome Analysis Resource Tool
most recent commit 3 years ago
Single Cell Training ⭐ 63
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
most recent commit 5 months ago
Tomicsvis ⭐ 50
Transcriptomics Visualization R package.
total releases 1most recent commit 3 months ago
Ggvolc ⭐ 50
𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of interest with unprecedented ease. With just a single line of code, visualize complex datasets, gaining deeper insights and simplifying data representation
most recent commit 6 months ago
Tcc Gui ⭐ 37
📊 Graphical User Interface for TCC package
most recent commit a year ago
Omicselector ⭐ 26
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
most recent commit 10 months ago
Vigen ⭐ 24
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
most recent commit a year ago
Beyondcell ⭐ 23
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq data and proposing cancer-specific treatments.
most recent commit 9 months ago
Rna Seq Snakemake ⭐ 20
Snakemake based pipeline for RNA-Seq analysis
most recent commit 5 years ago
Parser ⭐ 15
parseR: Pipeline for rna-seq analysis in R
most recent commit 7 years ago
Splatter Paper ⭐ 15
Data and analysis for the Splatter paper
most recent commit 6 years ago
Bgeedb_r ⭐ 13
Source code of the R packge BgeeDB to use data from the Bgee database
most recent commit 5 months ago
Ebaii ⭐ 12
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
most recent commit 6 months ago
Circompara ⭐ 12
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
most recent commit 4 years ago
Atacr ⭐ 12
Analysing Capture Seq Count Data
most recent commit 6 years ago
Pyreqtl ⭐ 9
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
total releases 2most recent commit 4 years ago
Deseq2shiny ⭐ 8
a web-based R shiny application that wraps DESeq2 R package
most recent commit 4 years ago
Mtd ⭐ 8
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
most recent commit a year ago
Scmagic ⭐ 6
Accurately annotating scRNA-seq data using two rounds of reference-based classification
most recent commit a year ago
Knowseq ⭐ 6
KnowSeq R package
most recent commit 2 years ago
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