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The Top 22 Bioinformatics R Package Open Source Projects

Open source projects categorized as Bioinformatics R Package
Categories > Data Processing > Bioinformatics
Categories > Package Managers > R Package
Bigsnpr ⭐ 168
R package for the analysis of massive SNP arrays.
dependent packages 2total releases 15most recent commit 3 months ago
Mungesumstats ⭐ 59
Rapid standardisation and quality control of GWAS or QTL summary statistics
most recent commit 3 months ago
Slurmr ⭐ 50
slurmR: A Lightweight Wrapper for Slurm
total releases 3most recent commit 6 months ago
Testingpackage ⭐ 43
R Package Illustrating Components of an R package for BCB410H - Applied Bioinformatics (2019-2023), University of Toronto, Canada
most recent commit 3 months ago
Orthogene ⭐ 31
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️
most recent commit 4 months ago
Omicselector ⭐ 26
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
most recent commit 10 months ago
Cemitool ⭐ 19
Co-Expression Module Identification Tool (CEMiTool) official repository
most recent commit 2 years ago
Risa ⭐ 17
Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomics-based assays (i.e. mass spectrometry) can be processed into an xcmsSet object (from the xcms R package).
most recent commit 6 years ago
Rwikipathways ⭐ 12
R package for WikiPathways API
most recent commit 4 months ago
Piano ⭐ 11
piano - An R/Bioconductor package for gene set analysis
most recent commit 2 years ago
Chromatographr ⭐ 11
Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).
most recent commit 4 months ago
Isoformic ⭐ 10
Isoform-level functional RNA-Seq analysis
most recent commit 10 months ago
Metabar ⭐ 9
metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
most recent commit a year ago
Poma ⭐ 8
📦 Tools for Omics Data Analysis
most recent commit 3 months ago
Seqr ⭐ 8
fast and comprehensive k-mer counting package
total releases 1most recent commit 3 years ago
Transite ⭐ 7
RNA-binding protein motif analysis
most recent commit a year ago
Dbgap2x ⭐ 7
most recent commit 5 years ago
Neonmicrobe ⭐ 6
Processing NEON soil microbe marker gene sequence data into ASV tables.
most recent commit 2 years ago
Copynumberplots ⭐ 6
R package to create plots representing copy number data using karyoploteR
most recent commit 7 months ago
Rhdf5filters ⭐ 5
Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.
most recent commit 4 months ago
Treesearch ⭐ 5
R package for phylogenetic tree search under custom optimality criteria
dependent packages 3total releases 23most recent commit 8 months ago
Ctrap ⭐ 5
Identification of candidate causal perturbations from differential gene expression data
most recent commit 3 months ago
The 2 Most Depended On Bioinformatics R Package Open Source Projects
Treesearch ⭐ 5
R package for phylogenetic tree search under custom optimality criteria
dependent packages 3total releases 23latest release August 26, 2023most recent commit 8 months ago
Bigsnpr ⭐ 168
R package for the analysis of massive SNP arrays.
dependent packages 2total releases 15latest release March 28, 2023most recent commit 3 months ago
The 4 Latest Releases In Bioinformatics R Package Open Source Projects
Treesearch ⭐ 5
R package for phylogenetic tree search under custom optimality criteria
dependent packages 3total releases 23latest release August 26, 2023most recent commit 8 months ago
Bigsnpr ⭐ 168
R package for the analysis of massive SNP arrays.
dependent packages 2total releases 15latest release March 28, 2023most recent commit 3 months ago
Seqr ⭐ 8
fast and comprehensive k-mer counting package
total releases 1latest release September 15, 2021most recent commit 3 years ago
Slurmr ⭐ 50
slurmR: A Lightweight Wrapper for Slurm
total releases 3latest release September 03, 2021most recent commit 6 months ago
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