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The Top 23 Bioinformatics Protein Open Source Projects

Open source projects categorized as Bioinformatics Protein
Categories > Data Processing > Bioinformatics
Categories > Protein
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58most recent commit 3 months agopypi biopython} Downloads
Awesome Deepbio ⭐ 1,467
A curated list of awesome deep learning applications in the field of computational biology
most recent commit 5 years ago
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29most recent commit 4 months agopypi graphein} Downloads
Deeppurpose ⭐ 826
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
total releases 13most recent commit 6 months ago
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52most recent commit 3 months agopypi biotite} Downloads
Hh Suite ⭐ 429
Remote protein homology detection suite.
most recent commit a year ago
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86most recent commit 3 months agopypi pyfaidx} Downloads
Bakta ⭐ 365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
total releases 37most recent commit 3 months ago
Plip ⭐ 320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
dependent packages 1total releases 25most recent commit 8 months agopypi plip} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38most recent commit 4 months agopypi pdb-tools} Downloads
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Kaiju ⭐ 236
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
most recent commit 5 months ago
Lightdock ⭐ 234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 3 months ago
Hgvs ⭐ 226
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
dependent packages 12total releases 104most recent commit 3 months agopypi hgvs} Downloads
Pronto ⭐ 212
A Python frontend to (Open Biomedical) Ontologies.
dependent packages 27total releases 76most recent commit 7 months agopypi pronto} Downloads
P2rank ⭐ 193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
most recent commit 3 months ago
Imgthla ⭐ 178
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
most recent commit 3 months ago
Metaeuk ⭐ 142
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
most recent commit 8 months ago
Bio4j ⭐ 112
Bio4j abstract model and general entry point to the project
most recent commit 7 years ago
Biojava Tutorial ⭐ 111
📖📚An introductory tutorial for BioJava
most recent commit 3 months ago
Run_dbcan ⭐ 109
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
total releases 17most recent commit 3 months ago
Buddysuite ⭐ 105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
total releases 18most recent commit 2 years ago
Philosopher ⭐ 104
A complete toolkit for shotgun proteomics data analysis
most recent commit 3 months ago
The 10 Most Depended On Bioinformatics Protein Open Source Projects
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months agopypi biopython} Downloads
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Bio ⭐ 51
Bioinformatics utilities.
dependent packages 84total releases 106latest release October 20, 2023most recent commit 3 months agopypi bio} Downloads
Pronto ⭐ 212
A Python frontend to (Open Biomedical) Ontologies.
dependent packages 27total releases 76latest release August 17, 2023most recent commit 7 months agopypi pronto} Downloads
Nightingale ⭐ 102
Data visualisation web components for the life sciences.
dependent packages 21total releases 42latest release December 01, 2022most recent commit 9 months agonpm data-loader} Downloads
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 3 months agopypi biotite} Downloads
Hgvs ⭐ 226
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
dependent packages 12total releases 104latest release November 21, 2022most recent commit 3 months agopypi hgvs} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 4 months agopypi pdb-tools} Downloads
Bionode Seq ⭐ 7
Module for DNA, RNA and protein sequences manipulation
dependent packages 4total releases 1latest release September 02, 2014most recent commit 7 years agonpm bionode-seq} Downloads
Peptides ⭐ 71
An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
dependent packages 4total releases 21latest release May 14, 2021most recent commit 4 months ago
The 10 Latest Releases In Bioinformatics Protein Open Source Projects
Bakta ⭐ 365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
total releases 37latest release November 29, 2023most recent commit 3 months ago
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22latest release October 30, 2023most recent commit 6 months ago
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
Bio ⭐ 51
Bioinformatics utilities.
dependent packages 84total releases 106latest release October 20, 2023most recent commit 3 months agopypi bio} Downloads
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Pfeature ⭐ 41
A software package for computing features of peptides and proteins
total releases 5latest release September 13, 2023most recent commit 8 months ago
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 3 months agopypi biotite} Downloads
Pronto ⭐ 212
A Python frontend to (Open Biomedical) Ontologies.
dependent packages 27total releases 76latest release August 17, 2023most recent commit 7 months agopypi pronto} Downloads
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months agopypi biopython} Downloads
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