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The Top 11 Shell Pipeline Bioinformatics Open Source Projects

Open source projects categorized as Shell Pipeline Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Data Processing > Pipeline
Rush ⭐ 782
A cross-platform command-line tool for executing jobs in parallel
total releases 32most recent commit 5 months ago
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Bpipe ⭐ 220
Bpipe - a tool for running and managing bioinformatics pipelines
most recent commit 6 months ago
Microbiomebestpracticereview ⭐ 45
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
most recent commit 2 years ago
Dee2 ⭐ 37
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
most recent commit 8 months ago
Ctdna Pipeline ⭐ 24
A simplified pipeline for ctDNA sequencing data analysis
most recent commit 7 years ago
Pipernaseq ⭐ 16
A comprehensive pipeline for RNAseq data analysis
most recent commit 5 months ago
Rmap ⭐ 15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
most recent commit 5 months ago
Deepvariant On Spark ⭐ 11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
most recent commit 2 years ago
Piperiboseq ⭐ 10
A comprehensive pipeline for Ribo-seq data analysis
most recent commit 5 months ago
Flowbio ⭐ 9
A fast, easy way to present complex bioinformatics pipelines to biologists
most recent commit 6 years ago
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