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The Top 23 Perl Bioinformatics Open Source Projects

Open source projects categorized as Perl Bioinformatics
Categories > Data Processing > Bioinformatics
Awesome ⭐ 565
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
most recent commit 7 months ago
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Bioperl Live ⭐ 285
Core BioPerl 1.x code
dependent packages 2total releases 41most recent commit 3 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83most recent commit 2 years ago
Readfq ⭐ 105
Fast multi-line FASTA/Q reader in several programming languages
most recent commit 5 years ago
Bio_scripts ⭐ 73
Practical, reusable scripts for bioinformatics
most recent commit 5 years ago
Edge ⭐ 70
EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
most recent commit 2 years ago
Work_flow_of_population_genetics ⭐ 61
整理常用的群体遗传学分析流程和脚本
most recent commit 3 months ago
Bigsdb ⭐ 53
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
most recent commit 3 months ago
Raptor ⭐ 50
Graph-based mapping of long sequences, noisy or HiFi.
most recent commit 4 years ago
Bioperl6 ⭐ 49
reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
most recent commit 6 years ago
Ensembl Compara ⭐ 46
The Ensembl Compara Perl API and SQL schema
most recent commit 3 months ago
Snpsplit ⭐ 43
Allele-specific alignment sorting
most recent commit a year ago
Craq ⭐ 41
Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
most recent commit 4 months ago
Assembly_improvement ⭐ 39
Improve the quality of a denovo assembly by scaffolding and gap filling
most recent commit 4 years ago
Datasets Sars Cov 2 ⭐ 38
Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
most recent commit a year ago
Genome Annotation Pipeline ⭐ 36
Genome annotation pipeline
most recent commit 4 months ago
Bioperl Run ⭐ 33
BioPerl wrappers
most recent commit 4 years ago
Pgcgap ⭐ 29
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
most recent commit a year ago
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Biotoolbox ⭐ 27
Tools for querying and analysis of genomic data
most recent commit 7 months ago
Perl For Bioinformatics ⭐ 26
An attempt to help anyone interested in using Perl for Bioinformatics
most recent commit 4 years ago
The 2 Most Depended On Perl Bioinformatics Open Source Projects
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Bioperl Live ⭐ 285
Core BioPerl 1.x code
dependent packages 2total releases 41latest release February 03, 2021most recent commit 3 months ago
The 6 Latest Releases In Perl Bioinformatics Open Source Projects
Toxinpred2 ⭐ 8
An improved method for predicting toxicity of proteins
total releases 2latest release August 16, 2023most recent commit 8 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Bioperl Live ⭐ 285
Core BioPerl 1.x code
dependent packages 2total releases 41latest release February 03, 2021most recent commit 3 months ago
Bio Tradis ⭐ 15
A set of tools to analyse the output from TraDIS analyses
total releases 14latest release December 04, 2019most recent commit 8 months ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83latest release November 06, 2019most recent commit 2 years ago
Mlst_check ⭐ 14
Multilocus sequence typing by blast using the schemes from PubMLST
total releases 13latest release March 03, 2017most recent commit 3 years ago
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