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The Top 23 Bioinformatics Pdb Open Source Projects

Open source projects categorized as Bioinformatics Pdb
Categories > Data Processing > Bioinformatics
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20most recent commit 7 months agopypi biopandas} Downloads
Biojava ⭐ 564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
dependent packages 16total releases 56most recent commit 3 months ago
Plip ⭐ 320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
dependent packages 1total releases 25most recent commit 8 months agopypi plip} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38most recent commit 4 months agopypi pdb-tools} Downloads
P2rank ⭐ 193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
most recent commit 3 months ago
Biosyntax ⭐ 184
Syntax highlighting for computational biology
most recent commit 3 years ago
Rna Tools ⭐ 129
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
total releases 110most recent commit 3 months ago
Freesasa ⭐ 95
C-library for calculating Solvent Accessible Surface Areas
most recent commit 4 months ago
Biostructures.jl ⭐ 77
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
most recent commit 4 months ago
Mitos.jl ⭐ 64
Mutual Information Tools for protein Sequence analysis in Julia
most recent commit 3 months ago
Cath Tools ⭐ 51
Protein structure comparison tools such as SSAP and SNAP
most recent commit 5 months ago
Libmol ⭐ 27
Single Page Web Application for displaying and studying molecular models
most recent commit 3 years ago
Pdb Benchmarks ⭐ 26
Benchmarking common tasks on proteins in various languages and packages
most recent commit 3 years ago
Lightdock Python2.7 ⭐ 20
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 4 years ago
St Speckmol ⭐ 18
🧬Streamlit Component for creating Speck molecular structures within Streamlit Web app🚀.
total releases 5most recent commit 9 months ago
Molstar React ⭐ 18
Molstar as a react component
total releases 8most recent commit 10 months ago
Ramachandraw ⭐ 12
Ramachandran plotting tool
total releases 5most recent commit a year ago
Pdbaser ⭐ 11
Protein preparation for MD, made faster and easier !
most recent commit 4 months ago
Pose ⭐ 10
A bare metal Python library for building and manipulating protein molecular structures
most recent commit 5 months ago
Managing_your_biological_data_with_python_3 ⭐ 9
<<Managing Your Biological Data with Python>> wirtten in Python 3
most recent commit 7 years ago
Prodigy Lig ⭐ 8
Prediction of Protein-Small molecule binding affinities
most recent commit a year ago
Patoz ⭐ 8
Protein Data Bank (pdb) file parser
total releases 1most recent commit 2 years ago
Biomolecularstructures.jl ⭐ 8
The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.
most recent commit 7 years ago
The 4 Most Depended On Bioinformatics Pdb Open Source Projects
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20latest release August 28, 2023most recent commit 7 months agopypi biopandas} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 4 months agopypi pdb-tools} Downloads
The 10 Latest Releases In Bioinformatics Pdb Open Source Projects
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20latest release August 28, 2023most recent commit 7 months agopypi biopandas} Downloads
St Speckmol ⭐ 18
🧬Streamlit Component for creating Speck molecular structures within Streamlit Web app🚀.
total releases 5latest release June 28, 2022most recent commit 9 months ago
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 4 months agopypi pdb-tools} Downloads
Molstar React ⭐ 18
Molstar as a react component
total releases 8latest release April 26, 2022most recent commit 10 months ago
Ramachandraw ⭐ 12
Ramachandran plotting tool
total releases 5latest release December 03, 2020most recent commit a year ago
Patoz ⭐ 8
Protein Data Bank (pdb) file parser
total releases 1latest release April 28, 2020most recent commit 2 years ago
Mitos.jl ⭐ 64
Mutual Information Tools for protein Sequence analysis in Julia
latest release December 21, 2017most recent commit 3 months ago
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