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The Top 23 Bioinformatics Sequencing Ngs Open Source Projects

Open source projects categorized as Bioinformatics Sequencing Ngs
Categories > Data Processing > Bioinformatics
Categories > Science > Ngs
Categories > Science > Sequencing
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 6 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16most recent commit 3 months ago
Sortmerna ⭐ 220
SortMeRNA: next-generation sequence filtering and alignment tool
most recent commit a month ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Afterqc ⭐ 157
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
most recent commit 6 years ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Gencore ⭐ 103
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
most recent commit 6 months ago
Cloops ⭐ 99
Accurate and flexible loops calling tool for 3D genomic data.
most recent commit 2 years ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 4 months ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Opengene.jl ⭐ 61
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
most recent commit 2 years ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Grabseqs ⭐ 44
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
total releases 11most recent commit 4 years ago
Snpsplit ⭐ 43
Allele-specific alignment sorting
most recent commit a year ago
Migec ⭐ 40
A RepSeq processing swiss-knife
most recent commit 10 months ago
Migmap ⭐ 38
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
most recent commit 6 years ago
Seqcluster ⭐ 34
small RNA analysis from NGS data
total releases 38most recent commit 2 years ago
Uniquekmer ⭐ 33
Generate unique KMERs for every contig in a FASTA file
most recent commit 2 years ago
Bio Dockers ⭐ 32
🐳 Bio-dockers: dockerized bioinformatic tools
most recent commit 4 months ago
The 2 Most Depended On Bioinformatics Sequencing Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
The 9 Latest Releases In Bioinformatics Sequencing Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16latest release May 16, 2023most recent commit 3 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1latest release December 15, 2021most recent commit 6 months ago
Seqcluster ⭐ 34
small RNA analysis from NGS data
total releases 38latest release October 14, 2020most recent commit 2 years ago
Htsinfer ⭐ 7
HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data
total releases 1latest release June 04, 2020most recent commit 3 months ago
Grabseqs ⭐ 44
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
total releases 11latest release January 29, 2020most recent commit 4 years ago
Seroba ⭐ 14
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
total releases 3latest release November 21, 2017most recent commit 9 months ago
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