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The Top 17 Bioinformatics Ngs Rna Seq Open Source Projects

Open source projects categorized as Bioinformatics Ngs Rna Seq
Categories > Data Processing > Bioinformatics
Categories > Science > Ngs
Categories > Rna Seq
Deeptools ⭐ 644
Tools to process and analyze deep sequencing data.
most recent commit 12 days ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Isoquant ⭐ 98
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
most recent commit 3 months ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Circrna ⭐ 32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
most recent commit 3 months ago
Workshop Rnaseq ⭐ 30
Workshop • Analysis of RNA-seq data
most recent commit 6 months ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29most recent commit a year ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Open_pipelines ⭐ 17
Pipelines for NGS data preprocessing by the Bock lab and friends
most recent commit 2 years ago
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32most recent commit a year ago
Ebaii ⭐ 12
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
most recent commit 5 months ago
Workshop Ngsintro ⭐ 12
Workshop • Intro to Bioinformatics using NGS data • 5 days
most recent commit 3 months ago
Bioinformatics ⭐ 10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
most recent commit 6 months ago
Captus ⭐ 8
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
most recent commit 3 months ago
Decontaminer ⭐ 5
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS da
most recent commit a year ago
Ipsa Nf ⭐ 5
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
most recent commit 5 years ago
The 2 Latest Releases In Bioinformatics Ngs Rna Seq Open Source Projects
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32latest release September 23, 2019most recent commit a year ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29latest release September 21, 2018most recent commit a year ago
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