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The Top 23 Pipeline Bioinformatics Ngs Open Source Projects

Open source projects categorized as Pipeline Bioinformatics Ngs
Categories > Data Processing > Bioinformatics
Categories > Science > Ngs
Categories > Data Processing > Pipeline
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Cloops ⭐ 99
Accurate and flexible loops calling tool for 3D genomic data.
most recent commit 2 years ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Asap ⭐ 46
A scalable bacterial genome assembly, annotation and analysis pipeline
most recent commit 2 years ago
Migec ⭐ 40
A RepSeq processing swiss-knife
most recent commit 10 months ago
Iarc Nf ⭐ 35
List of IARC bioinformatics nextflow pipelines
most recent commit a year ago
Circrna ⭐ 32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
most recent commit 3 months ago
Pgcgap ⭐ 29
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
most recent commit a year ago
Atacseq_pipeline ⭐ 25
Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.
most recent commit 3 months ago
Ctdna Pipeline ⭐ 24
A simplified pipeline for ctDNA sequencing data analysis
most recent commit 7 years ago
Ngs Preprocess ⭐ 23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
most recent commit 3 months ago
Kgwasflow ⭐ 19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
most recent commit 7 months ago
Gatk4_best_practice ⭐ 18
GATK4 Best Practice Nextflow Pipeline
most recent commit 6 years ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Open_pipelines ⭐ 17
Pipelines for NGS data preprocessing by the Bock lab and friends
most recent commit 2 years ago
Ngs Pipeline ⭐ 12
Pipeline for Somatic Variant Calling with WES and WGS data
most recent commit a year ago
Deepvariant On Spark ⭐ 11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
most recent commit 2 years ago
Staph B.github.io ⭐ 7
Visit the site here: https://staphb.org
most recent commit a year ago
Cowwid ⭐ 7
Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.
most recent commit 8 months ago
Fonda ⭐ 7
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
most recent commit 2 years ago
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