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The Top 15 Bioinformatics Ngs Analysis Open Source Projects

Open source projects categorized as Bioinformatics Ngs Analysis
Categories > Data Processing > Bioinformatics
Categories > Ngs Analysis
Bioinstaller ⭐ 50
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
dependent packages 1total releases 15most recent commit a year ago
Wisecondorx ⭐ 35
WisecondorX — An evolved WISECONDOR
most recent commit 3 years ago
Csbb Shiny ⭐ 28
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
most recent commit a year ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Scriptmanager ⭐ 14
most recent commit 5 months ago
Cnnpeaks ⭐ 13
The ChIP-Seq peak calling algorithm using convolution neural networks
most recent commit 3 years ago
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32most recent commit a year ago
Workshop Ngsintro ⭐ 12
Workshop • Intro to Bioinformatics using NGS data • 5 days
most recent commit 3 months ago
Seal ⭐ 8
SEAL db - Simple, Efficient And Lite database for NGS
most recent commit 3 months ago
Ld Pgta ⭐ 7
Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.
most recent commit 2 years ago
Ampligone ⭐ 6
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
total releases 8most recent commit 9 months ago
Bammmotif2 ⭐ 5
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
most recent commit 4 years ago
Trueconsense ⭐ 5
TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time
most recent commit a year ago
Sars2seq ⭐ 5
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
most recent commit a year ago
The 3 Latest Releases In Bioinformatics Ngs Analysis Open Source Projects
Ampligone ⭐ 6
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
total releases 8latest release August 08, 2023most recent commit 9 months ago
Toolkit ⭐ 13
A toolkit for NGS analysis with Python
total releases 32latest release September 23, 2019most recent commit a year ago
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