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The Top 23 Bioinformatics Ngs Open Source Projects

Open source projects categorized as Bioinformatics Ngs
Categories > Data Processing > Bioinformatics
Categories > Science > Ngs
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 6 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11most recent commit a month agocargo hts-sys} Downloads
Deeptools ⭐ 644
Tools to process and analyze deep sequencing data.
most recent commit 12 days ago
Jvarkit ⭐ 440
Java utilities for Bioinformatics
most recent commit 5 months ago
Bioconvert ⭐ 344
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
total releases 34most recent commit 5 months ago
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16most recent commit 3 months ago
Sortmerna ⭐ 220
SortMeRNA: next-generation sequence filtering and alignment tool
most recent commit a month ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Scde ⭐ 163
R package for analyzing single-cell RNA-seq data
most recent commit a year ago
Afterqc ⭐ 157
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
most recent commit 6 years ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5most recent commit a year ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Mutscan ⭐ 127
Detect and visualize target mutations by scanning FastQ files directly
most recent commit 2 years ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Atropos ⭐ 116
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
most recent commit 4 months ago
Gencore ⭐ 103
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
most recent commit 6 months ago
Cloops ⭐ 99
Accurate and flexible loops calling tool for 3D genomic data.
most recent commit 2 years ago
Isoquant ⭐ 98
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
most recent commit 3 months ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 4 months ago
The 6 Most Depended On Bioinformatics Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Peppy ⭐ 35
Project metadata manager for PEPs in Python
dependent packages 10total releases 44latest release November 28, 2023most recent commit a month agopypi peppy} Downloads
Exon ⭐ 20
Exon is an OLAP query engine specifically for biology and life science applications.
dependent packages 4total releases 12latest release November 20, 2023most recent commit 3 months agocargo exon-common} Downloads
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
The 10 Latest Releases In Bioinformatics Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Peppy ⭐ 35
Project metadata manager for PEPs in Python
dependent packages 10total releases 44latest release November 28, 2023most recent commit a month agopypi peppy} Downloads
Exon ⭐ 20
Exon is an OLAP query engine specifically for biology and life science applications.
dependent packages 4total releases 12latest release November 20, 2023most recent commit 3 months agocargo exon-common} Downloads
Sigalign ⭐ 10
A Similarity-Guided Alignment Algorithm
total releases 7latest release November 10, 2023most recent commit 3 months ago
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Microhapdb ⭐ 7
Portable database of microhaplotype marker and allele frequency data
total releases 13latest release October 26, 2023most recent commit 6 months ago
Platon ⭐ 93
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
total releases 10latest release August 10, 2023most recent commit 7 months ago
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