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The Top 23 Workflow Bioinformatics Nextflow Open Source Projects

Open source projects categorized as Workflow Bioinformatics Nextflow
Categories > Data Processing > Bioinformatics
Categories > Nextflow
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250most recent commit 3 months ago
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 3 months ago
Tools ⭐ 205
Python package with helper tools for the nf-core community.
dependent packages 2total releases 42most recent commit 3 months agopypi nf-core} Downloads
Mag ⭐ 164
Assembly and binning of metagenomes
most recent commit 3 months ago
Sarek ⭐ 126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
most recent commit 4 years ago
Dockstore ⭐ 113
Our VM/Docker sharing infrastructure and management component
most recent commit 3 months ago
Eager ⭐ 112
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
most recent commit 3 months ago
Dolphinnext ⭐ 92
A graphical user interface for distributed data processing of high throughput genomics
most recent commit a year ago
Taxprofiler ⭐ 78
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
most recent commit 3 months ago
Configs ⭐ 73
Config files used to define parameters specific to compute environments at different Institutions
most recent commit 3 months ago
Funcscan ⭐ 49
(Meta-)genome screening for functional and natural product gene sequences
most recent commit 3 months ago
Porecov ⭐ 38
SARS-CoV-2 workflow for nanopore sequence data
most recent commit 3 months ago
Cecret ⭐ 36
Reference-based consensus creation
most recent commit 3 months ago
Spatialtranscriptomics ⭐ 34
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
most recent commit 3 months ago
Circrna ⭐ 32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
most recent commit 3 months ago
Epitopeprediction ⭐ 28
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
most recent commit 3 months ago
Pipeliner ⭐ 25
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
most recent commit 4 years ago
Ngs Preprocess ⭐ 23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
most recent commit 3 months ago
Cookiecutter ⭐ 18
DEPRECIATED! Please use nf-core/tools instead
most recent commit 6 years ago
Exoseq ⭐ 10
Please consider using/contributing to https://github.com/nf-core/sarek
most recent commit 5 years ago
Nf Workflows ⭐ 7
Repository of Nextflow+BioContainers workflows
most recent commit 3 years ago
Nf Encyclopedia ⭐ 5
A NextFlow pipeline for chromatogram library DIA proteomics workflows
most recent commit 10 months ago
Nf Repeatmasking ⭐ 5
Nextflow workflow for automatic repeat detection, classification and masking
most recent commit 6 years ago
The 2 Most Depended On Workflow Bioinformatics Nextflow Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Tools ⭐ 205
Python package with helper tools for the nf-core community.
dependent packages 2total releases 42latest release December 20, 2023most recent commit 3 months agopypi nf-core} Downloads
The 2 Latest Releases In Workflow Bioinformatics Nextflow Open Source Projects
Tools ⭐ 205
Python package with helper tools for the nf-core community.
dependent packages 2total releases 42latest release December 20, 2023most recent commit 3 months agopypi nf-core} Downloads
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
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