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The Top 20 Python Bioinformatics Next Generation Sequencing Open Source Projects

Open source projects categorized as Python Bioinformatics Next Generation Sequencing
Categories > Data Processing > Bioinformatics
Categories > Next Generation Sequencing
Circlator ⭐ 193
A tool to circularize genome assemblies
total releases 33most recent commit 8 months ago
Ariba ⭐ 135
Antimicrobial Resistance Identification By Assembly
dependent packages 1total releases 54most recent commit a year agopypi ariba} Downloads
Gubbins ⭐ 133
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
most recent commit 5 months ago
Deepmicrobes ⭐ 61
DeepMicrobes: taxonomic classification for metagenomics with deep learning
most recent commit 2 years ago
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21most recent commit 2 years agopypi pyfastaq} Downloads
Iva ⭐ 37
de novo virus assembler of Illumina paired reads
total releases 16most recent commit 3 years ago
Oliver ⭐ 36
An opinionated Cromwell orchestration manager.
total releases 27most recent commit a year ago
Advntr ⭐ 35
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
most recent commit 3 months ago
Wdldoc ⭐ 26
Create WDL documentation using Markdown.
total releases 14most recent commit a year ago
Ngstools ⭐ 23
My own tools code for NGS data analysis (Next Generation Sequencing)
most recent commit 5 years ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Gff3toembl ⭐ 20
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
most recent commit 5 years ago
Icallsv ⭐ 16
A Framework to call Structural Variants from NGS based datasets
total releases 1most recent commit 6 years ago
Plasmidtron ⭐ 16
Assembling the cause of phenotypes and genotypes from NGS data
most recent commit 4 years ago
Saffrontree ⭐ 14
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
most recent commit 4 years ago
Seroba ⭐ 14
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
total releases 3most recent commit 9 months ago
Lodestone ⭐ 11
Mycobacterial pipeline
most recent commit 4 months ago
Ngsderive ⭐ 10
Forensic analysis tool useful in backwards computing information from next-generation sequencing data.
total releases 24most recent commit 6 months ago
Py4lifesci ⭐ 9
Code repository for the book "Python for the Life Sciences" by Lancaster & Webster
most recent commit 5 years ago
Captus ⭐ 8
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
most recent commit 3 months ago
The 2 Most Depended On Python Bioinformatics Next Generation Sequencing Open Source Projects
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21latest release February 19, 2018most recent commit 2 years agopypi pyfastaq} Downloads
Ariba ⭐ 135
Antimicrobial Resistance Identification By Assembly
dependent packages 1total releases 54latest release September 07, 2020most recent commit a year agopypi ariba} Downloads
The 9 Latest Releases In Python Bioinformatics Next Generation Sequencing Open Source Projects
Oliver ⭐ 36
An opinionated Cromwell orchestration manager.
total releases 27latest release November 20, 2021most recent commit a year ago
Wdldoc ⭐ 26
Create WDL documentation using Markdown.
total releases 14latest release September 10, 2021most recent commit a year ago
Ariba ⭐ 135
Antimicrobial Resistance Identification By Assembly
dependent packages 1total releases 54latest release September 07, 2020most recent commit a year agopypi ariba} Downloads
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21latest release February 19, 2018most recent commit 2 years agopypi pyfastaq} Downloads
Circlator ⭐ 193
A tool to circularize genome assemblies
total releases 33latest release January 31, 2018most recent commit 8 months ago
Iva ⭐ 37
de novo virus assembler of Illumina paired reads
total releases 16latest release January 25, 2018most recent commit 3 years ago
Seroba ⭐ 14
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
total releases 3latest release November 21, 2017most recent commit 9 months ago
Icallsv ⭐ 16
A Framework to call Structural Variants from NGS based datasets
total releases 1latest release August 18, 2017most recent commit 6 years ago
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