Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Bioinformatics Nanopore Open Source Projects

Open source projects categorized as Bioinformatics Nanopore
Categories > Data Processing > Bioinformatics
Categories > Nanopore
Sniffles ⭐ 479
Structural variation caller using third generation sequencing
total releases 8most recent commit 3 months ago
Awesome Nanopore ⭐ 175
A curated list of awesome nanopore analysis tools.
most recent commit 5 months ago
Mag ⭐ 164
Assembly and binning of metagenomes
most recent commit 3 months ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Squigglekit ⭐ 106
SquiggleKit: A toolkit for manipulating nanopore signal data
most recent commit a year ago
Isoquant ⭐ 98
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
most recent commit 4 months ago
Taxprofiler ⭐ 78
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
most recent commit 3 months ago
Nanocompore ⭐ 56
RNA modifications detection from Nanopore dRNA-Seq data
total releases 6most recent commit 2 years ago
Rattle ⭐ 51
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
most recent commit 4 months ago
Clairs ⭐ 42
ClairS - a deep-learning method for long-read somatic small variant calling
most recent commit 3 months ago
Haslr ⭐ 39
A fast tool for hybrid genome assembly of long and short reads
most recent commit 4 years ago
Porecov ⭐ 38
SARS-CoV-2 workflow for nanopore sequence data
most recent commit 3 months ago
Sketchy ⭐ 35
Genomic neighbor typing of bacterial pathogens using MinHash 🐀
total releases 5most recent commit 2 years ago
Rkmh ⭐ 32
Classify sequencing reads using MinHash.
most recent commit 4 years ago
Tailfindr ⭐ 32
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
most recent commit a year ago
Wochenende ⭐ 30
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
most recent commit 2 years ago
Mmlong2 ⭐ 26
An all-in-one genome-centric metagenomics workflow using long reads
most recent commit 6 months ago
Awesome Sequencing Tech Papers ⭐ 26
A collection of publications on comparison of high-throughput sequencing technologies.
most recent commit 5 months ago
Rawhash ⭐ 23
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39
most recent commit 5 months ago
Tiptoft ⭐ 20
Predict plasmids from uncorrected long read data
total releases 6most recent commit 4 years ago
Clairs To ⭐ 18
ClairS-TO - a deep-learning method for tumor-only somatic SNV calling
most recent commit 3 months ago
Taeper ⭐ 16
A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
total releases 1most recent commit 6 years ago
Container_recipes ⭐ 14
Repository with all my container recipes 👩‍🍳
most recent commit 2 years ago
The 10 Latest Releases In Bioinformatics Nanopore Open Source Projects
Tbpore ⭐ 9
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
total releases 11latest release October 11, 2023most recent commit 6 months ago
Slow5 Rs ⭐ 5
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
dependent packages 1total releases 11latest release September 04, 2023most recent commit 8 months agocargo slow5lib-sys} Downloads
Ampligone ⭐ 6
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
total releases 8latest release August 08, 2023most recent commit 9 months ago
Sniffles ⭐ 479
Structural variation caller using third generation sequencing
total releases 8latest release July 27, 2023most recent commit 3 months ago
Trackcluster ⭐ 9
An analysis pipeline for Nanopore direct-RNA sequencing
total releases 5latest release January 24, 2023most recent commit 5 months ago
Sketchy ⭐ 35
Genomic neighbor typing of bacterial pathogens using MinHash :rat:
total releases 5latest release August 26, 2022most recent commit 2 years ago
Nanocompore ⭐ 56
RNA modifications detection from Nanopore dRNA-Seq data
total releases 6latest release May 27, 2021most recent commit 2 years ago
Pistis ⭐ 5
Quality control plotting for long reads
total releases 11latest release March 03, 2021most recent commit 3 years ago
Tiptoft ⭐ 20
Predict plasmids from uncorrected long read data
total releases 6latest release December 05, 2019most recent commit 4 years ago
Fast5seek ⭐ 11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
total releases 2latest release October 19, 2018most recent commit a year ago
Popular Data Processing Categories
Jupyter Notebook
Dataset
Sql
Validation
Pipeline
Translation
Data Science
Classification
Transaction
Scraper
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.