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The Top 7 R Bioinformatics Microbiome Open Source Projects

Open source projects categorized as R Bioinformatics Microbiome
Categories > Data Processing > Bioinformatics
Categories > Microbiome
Dada2 ⭐ 428
Accurate sample inference from amplicon data with single nucleotide resolution
most recent commit 3 months ago
Decontam ⭐ 122
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
most recent commit a year ago
Microbiomer ⭐ 17
A comprehensive R package for microbiome analysis.
most recent commit a year ago
Microbial Bioinformatics Introductory Course Material 2018 ⭐ 12
Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL
most recent commit 4 years ago
16s Rdna V3 V4 ⭐ 8
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
most recent commit 3 years ago
Mtd ⭐ 8
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
most recent commit a year ago
Microbiome ⭐ 5
The standardized analysis pipeline used for analyzing 16S and metagenome data.
most recent commit 6 years ago
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