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The Top 15 Bioinformatics Microbiology Open Source Projects

Open source projects categorized as Bioinformatics Microbiology
Categories > Data Processing > Bioinformatics
Categories > Microbiology
Drep ⭐ 199
Rapid comparison and dereplication of genomes
dependent packages 1total releases 63most recent commit 7 months agopypi drep} Downloads
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6most recent commit 3 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23most recent commit 6 months agopypi pygenomeviz} Downloads
Platon ⭐ 93
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
total releases 10most recent commit 7 months ago
Referenceseeker ⭐ 85
Rapid determination of appropriate reference genomes.
total releases 12most recent commit 3 months ago
Rdptools ⭐ 36
Collection of commonly used RDP Tools for easy building
most recent commit 3 years ago
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Ghost Tree ⭐ 23
creating hybrid-gene phylogenetic trees for diversity analyses
most recent commit 2 years ago
Phantasm ⭐ 20
PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
most recent commit 5 months ago
Idbacapp ⭐ 20
A MALDI Mass Spectrometry Bioinformatics Platform
most recent commit 2 years ago
Microbiomer ⭐ 17
A comprehensive R package for microbiome analysis.
most recent commit a year ago
Gambit ⭐ 16
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
most recent commit 5 months ago
Hamroaster ⭐ 15
hAMRoaster is an analysis pipeline that can compare the output of nine different tools for detecting AMR genes and provide metrics of their performance
most recent commit a year ago
Tome ⭐ 9
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
most recent commit 4 years ago
Mgkit ⭐ 8
MGKit: Metagenomics Framework
most recent commit 2 years ago
The 2 Most Depended On Bioinformatics Microbiology Open Source Projects
Drep ⭐ 199
Rapid comparison and dereplication of genomes
dependent packages 1total releases 63latest release September 15, 2023most recent commit 7 months agopypi drep} Downloads
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
The 5 Latest Releases In Bioinformatics Microbiology Open Source Projects
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
Drep ⭐ 199
Rapid comparison and dereplication of genomes
dependent packages 1total releases 63latest release September 15, 2023most recent commit 7 months agopypi drep} Downloads
Platon ⭐ 93
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
total releases 10latest release August 10, 2023most recent commit 7 months ago
Referenceseeker ⭐ 85
Rapid determination of appropriate reference genomes.
total releases 12latest release January 14, 2022most recent commit 3 months ago
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6latest release July 15, 2018most recent commit 3 months ago
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