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The Top 13 Matlab Bioinformatics Open Source Projects

Open source projects categorized as Matlab Bioinformatics
Categories > Data Processing > Bioinformatics
U Track ⭐ 36
Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events
most recent commit 10 months ago
Pspm ⭐ 35
A matlab suite for Psycho-Physiological Modelling
most recent commit 3 months ago
Safepy ⭐ 34
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
most recent commit 4 months ago
Stratipy ⭐ 29
Graph regularized nonnegative matrix factorization (GNMF) in Python
most recent commit 4 years ago
U Track3d ⭐ 22
Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.
most recent commit 3 months ago
Informme ⭐ 15
An information-theoretic pipeline for methylation analysis of WGBS data
most recent commit 5 years ago
Pesto ⭐ 15
PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.
most recent commit 4 years ago
Epidemic ⭐ 11
EPIDEMIC is an easy-to-run educational toolkit for epidemiological analysis.
most recent commit 9 months ago
Sharpvisu ⭐ 8
Matlab-based software for corrections and processing of super-resolution microscopy data
most recent commit 9 months ago
Fr3d ⭐ 8
The official repository for "Find RNA 3D" (FR3D), a suite of programs for searching RNA 3D structures.
most recent commit a year ago
Cmeanalysis ⭐ 7
clathrin-mediated endocytosis analysis
most recent commit 3 months ago
U Probe ⭐ 6
Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation of the biosensor.
most recent commit 3 months ago
U Inferforce ⭐ 5
u-inferforce (Traction Force Microscopy) is a MATLAB software that reconstructs traction forces of cells adhered on elastic gel doped with beads.
most recent commit 3 months ago
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