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The Top 23 Bioinformatics Mass Spectrometry Open Source Projects

Open source projects categorized as Bioinformatics Mass Spectrometry
Categories > Data Processing > Bioinformatics
Categories > Mass Spectrometry
Sage ⭐ 173
Proteomics search & quantification so fast that it feels like magic
most recent commit 3 months ago
Pymzml ⭐ 151
pymzML - an interface between Python and mzML Mass spectrometry Files
most recent commit 3 months ago
Alphapept ⭐ 136
A modular, python-based framework for mass spectrometry. Powered by nbdev.
total releases 17most recent commit 5 months ago
Msnbase ⭐ 115
Base Classes and Functions for Mass Spectrometry and Proteomics
most recent commit 4 months ago
Philosopher ⭐ 104
A complete toolkit for shotgun proteomics data analysis
most recent commit 3 months ago
Msfragger ⭐ 83
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
most recent commit 4 months ago
Sirius ⭐ 66
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
most recent commit 5 months ago
Pymsfilereader ⭐ 45
Thermo MSFileReader Python bindings
dependent packages 2total releases 2most recent commit 3 years agopypi pymsfilereader} Downloads
Sirius Libs ⭐ 45
sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
most recent commit 9 months ago
Smartpeak ⭐ 30
Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing
most recent commit a year ago
Idbacapp ⭐ 20
A MALDI Mass Spectrometry Bioinformatics Platform
most recent commit a year ago
Plink2 ⭐ 17
pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.
most recent commit 2 years ago
Artms ⭐ 13
Analytical R Tools for Mass Spectrometry
most recent commit 10 months ago
Buddy_metabolomics ⭐ 12
Molecular formula discovery via bottom-up MS/MS interrogation
most recent commit 6 months ago
Pfind3 ⭐ 12
most recent commit 5 years ago
Msbuddy ⭐ 11
a python package for molecular formula analysis in MS-based small molecule studies
most recent commit 3 months ago
Pomashiny ⭐ 11
🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
most recent commit a year ago
Npdtools ⭐ 8
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
most recent commit 4 years ago
Specter ⭐ 8
Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics
most recent commit 6 years ago
Cyclobranch ⭐ 7
A tool for mass spectrometry data analysis.
most recent commit 8 months ago
Candycrunch ⭐ 7
Predicting glycan structure from LC-MS/MS data
total releases 6most recent commit 3 months ago
Msviz Backend ⭐ 6
A mass spectrometry visualization platform, developed by the PAF & Vital-IT, Swiss Institute of Bioinformatics.
most recent commit 6 years ago
Sm Engine ⭐ 6
Engine for metabolite annotation for imaging mass spectrometry
most recent commit 6 years ago
The 4 Latest Releases In Bioinformatics Mass Spectrometry Open Source Projects
Candycrunch ⭐ 7
Predicting glycan structure from LC-MS/MS data
total releases 6latest release November 16, 2023most recent commit 3 months ago
Alphapept ⭐ 136
A modular, python-based framework for mass spectrometry. Powered by nbdev.
total releases 17latest release November 15, 2023most recent commit 5 months ago
Synthedia ⭐ 5
Create synthetic DIA LC-MS/MS for proteomics experiments
total releases 4latest release November 07, 2022most recent commit a year ago
Pymsfilereader ⭐ 45
Thermo MSFileReader Python bindings
dependent packages 2total releases 2latest release July 23, 2019most recent commit 3 years agopypi pymsfilereader} Downloads
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