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The Top 23 Python Machine Learning Bioinformatics Open Source Projects

Open source projects categorized as Python Machine Learning Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Machine Learning > Machine Learning
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174most recent commit 3 months agopypi dash} Downloads
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Scanpy ⭐ 1,729
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77most recent commit 13 days agopypi scanpy} Downloads
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18most recent commit 5 months agopypi redun} Downloads
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4most recent commit 3 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32most recent commit 4 months agopypi cellrank} Downloads
Deepecg ⭐ 187
ECG classification programs based on ML/DL methods
most recent commit a year ago
Cellprofiler Analyst ⭐ 115
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
most recent commit 2 years ago
Dna2vec ⭐ 103
dna2vec: Consistent vector representations of variable-length k-mers
most recent commit 4 years ago
Tutorial ⭐ 94
Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)
most recent commit 3 months ago
Riddle ⭐ 91
Race and ethnicity Imputation from Disease history with Deep LEarning
most recent commit 6 years ago
Coursera Specializations ⭐ 68
Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody
most recent commit 6 years ago
Neuroseed ⭐ 64
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
most recent commit 6 months ago
Chembl Downloader ⭐ 55
Write reproducible code for getting and processing ChEMBL
most recent commit 3 months ago
Neodti ⭐ 54
NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions
most recent commit 3 years ago
Omiclearn ⭐ 50
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
most recent commit a year ago
Sv2 ⭐ 50
Support Vector Structural Variation Genotyper
total releases 10most recent commit 4 years ago
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9most recent commit 4 months agopypi glycowork} Downloads
Fabind ⭐ 45
FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
most recent commit 3 months ago
Eugene ⭐ 44
Elucidating the Utility of Genomic Elements with Neural Nets
most recent commit 5 months ago
Cell2cell ⭐ 44
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
most recent commit 5 months ago
Quantum Based Machine Learning Simulation ⭐ 42
A Quantum Computing and Machine Learning Model that accelerates the Drug Research and Development process
most recent commit 3 months ago
Scaden ⭐ 40
Deep Learning based cell composition analysis with Scaden.
total releases 13most recent commit 3 years ago
The 7 Most Depended On Python Machine Learning Bioinformatics Open Source Projects
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Scanpy ⭐ 1,729
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77latest release October 31, 2023most recent commit 13 days agopypi scanpy} Downloads
Mokapot ⭐ 31
Fast and flexible semi-supervised learning for peptide detection in Python
dependent packages 5total releases 26latest release September 11, 2023most recent commit 6 months agopypi mokapot} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Mbpls ⭐ 10
(Multiblock) Partial Least Squares Regression for Python
dependent packages 2total releases 15latest release October 30, 2018most recent commit 4 years agopypi mbpls} Downloads
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9latest release August 27, 2023most recent commit 4 months agopypi glycowork} Downloads
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18latest release November 12, 2023most recent commit 5 months agopypi redun} Downloads
The 10 Latest Releases In Python Machine Learning Bioinformatics Open Source Projects
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4latest release December 04, 2023most recent commit 3 months ago
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Candycrunch ⭐ 7
Predicting glycan structure from LC-MS/MS data
total releases 6latest release November 16, 2023most recent commit 3 months ago
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18latest release November 12, 2023most recent commit 5 months agopypi redun} Downloads
Scanpy ⭐ 1,729
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77latest release October 31, 2023most recent commit 13 days agopypi scanpy} Downloads
Mokapot ⭐ 31
Fast and flexible semi-supervised learning for peptide detection in Python
dependent packages 5total releases 26latest release September 11, 2023most recent commit 6 months agopypi mokapot} Downloads
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9latest release August 27, 2023most recent commit 4 months agopypi glycowork} Downloads
Cubat ⭐ 5
This project is no longer being updated and has been discontinued.
total releases 7latest release January 25, 2023most recent commit 6 months ago
Tiara ⭐ 25
tiara – a tool for DNA sequence classification
total releases 4latest release October 30, 2022most recent commit a year ago
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