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The Top 23 Machine Learning Bioinformatics Open Source Projects

Open source projects categorized as Machine Learning Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Machine Learning > Machine Learning
Cs Video Courses ⭐ 62,887
List of Computer Science courses with video lectures.
most recent commit 3 months ago
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174most recent commit 3 months agopypi dash} Downloads
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Scanpy ⭐ 1,729
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77most recent commit 14 days agopypi scanpy} Downloads
Tdc ⭐ 889
Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science
dependent packages 4total releases 32most recent commit 4 months agopypi PyTDC} Downloads
Anndata ⭐ 495
Annotated data.
dependent packages 399total releases 78most recent commit 10 days agopypi anndata} Downloads
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18most recent commit 5 months agopypi redun} Downloads
Raxml Ng ⭐ 339
RAxML Next Generation: faster, easier-to-use and more flexible
most recent commit 4 months ago
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4most recent commit 3 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32most recent commit 4 months agopypi cellrank} Downloads
Cuneiform ⭐ 215
Cuneiform distributed programming language
total releases 5most recent commit 10 months ago
Janggu ⭐ 205
Deep learning infrastructure for genomics
total releases 19most recent commit 3 years ago
Deep Rules ⭐ 198
Ten Quick Tips for Deep Learning in Biology
most recent commit 2 years ago
P2rank ⭐ 193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
most recent commit 3 months ago
Deepecg ⭐ 187
ECG classification programs based on ML/DL methods
most recent commit a year ago
Awesome Nanopore ⭐ 175
A curated list of awesome nanopore analysis tools.
most recent commit 5 months ago
Awesome Small Molecule Ml ⭐ 148
A curated list of resources for machine learning for small-molecule drug discovery
most recent commit 5 months ago
Pandora ⭐ 127
PANDORA Advanced Machine Learning for Data Integration, Analysis, and Insightful Discoveries in Health and Disease 💻
most recent commit 6 months ago
Dnanalyzer ⭐ 122
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
most recent commit 5 months ago
Cellprofiler Analyst ⭐ 115
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
most recent commit 2 years ago
Dna2vec ⭐ 103
dna2vec: Consistent vector representations of variable-length k-mers
most recent commit 4 years ago
Saber ⭐ 100
Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not stable.
total releases 2most recent commit 4 years ago
Tutorial ⭐ 94
Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)
most recent commit 3 months ago
The 10 Most Depended On Machine Learning Bioinformatics Open Source Projects
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Scanpy ⭐ 1,729
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77latest release October 31, 2023most recent commit 14 days agopypi scanpy} Downloads
Anndata ⭐ 495
Annotated data.
dependent packages 399total releases 78latest release October 31, 2023most recent commit 10 days agopypi anndata} Downloads
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4latest release May 29, 2016most recent commit 6 years ago
Mokapot ⭐ 31
Fast and flexible semi-supervised learning for peptide detection in Python
dependent packages 5total releases 26latest release September 11, 2023most recent commit 6 months agopypi mokapot} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Tdc ⭐ 889
Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science
dependent packages 4total releases 32latest release January 27, 2023most recent commit 4 months agopypi PyTDC} Downloads
Mbpls ⭐ 10
(Multiblock) Partial Least Squares Regression for Python
dependent packages 2total releases 15latest release October 30, 2018most recent commit 4 years agopypi mbpls} Downloads
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22latest release October 30, 2023most recent commit 6 months ago
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18latest release November 12, 2023most recent commit 5 months agopypi redun} Downloads
The 10 Latest Releases In Machine Learning Bioinformatics Open Source Projects
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4latest release December 04, 2023most recent commit 3 months ago
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Candycrunch ⭐ 7
Predicting glycan structure from LC-MS/MS data
total releases 6latest release November 16, 2023most recent commit 3 months ago
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18latest release November 12, 2023most recent commit 5 months agopypi redun} Downloads
Scanpy ⭐ 1,729
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77latest release October 31, 2023most recent commit 14 days agopypi scanpy} Downloads
Anndata ⭐ 495
Annotated data.
dependent packages 399total releases 78latest release October 31, 2023most recent commit 10 days agopypi anndata} Downloads
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22latest release October 30, 2023most recent commit 6 months ago
Mokapot ⭐ 31
Fast and flexible semi-supervised learning for peptide detection in Python
dependent packages 5total releases 26latest release September 11, 2023most recent commit 6 months agopypi mokapot} Downloads
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9latest release August 27, 2023most recent commit 4 months agopypi glycowork} Downloads
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