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The Top 22 Line Bioinformatics Open Source Projects

Open source projects categorized as Line Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Messaging > Line
Seqtk ⭐ 1,101
Toolkit for processing sequences in FASTA/Q formats
total releases 1most recent commit a month ago
Oneliners ⭐ 1,090
Useful bash one-liners for bioinformatics.
most recent commit 4 years ago
Rush ⭐ 608
A cross-platform command-line tool for executing jobs in parallel
total releases 26most recent commit 7 months ago
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1most recent commit 7 months ago
Bioinformatics One Liners ⭐ 277
Bioinformatics one liners from Ming Tang
most recent commit 2 years ago
Cuneiform ⭐ 210
Cuneiform distributed programming language
total releases 5most recent commit a day ago
Helpful_commands ⭐ 23
Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.
most recent commit 3 days ago
Bionitio Python ⭐ 18
Demonstrating best practices for bioinformatics command line tools
most recent commit 3 years ago
Bionode Fasta ⭐ 13
Streamable FASTA parser.
dependent packages 3total releases 13most recent commit 3 years agonpm bionode-fasta} Downloads
Cromwell Cli ⭐ 11
Command-line interface for Cromwell server 🐖
total releases 22most recent commit a month ago
Iroki_cli ⭐ 9
NOTE: The iroki command line tool is no longer maintained. Please see: https://github.com/mooreryan/iroki
most recent commit 5 years ago
Dishevelled Bio ⭐ 6
dishevelled.org bio
most recent commit a day ago
Blast Binder ⭐ 6
Repo for running command line-based BLAST in Jupyter environment provided via Binder.
most recent commit 3 months ago
Bionitio Rust ⭐ 5
Demonstrating best practices for bioinformatics command line tools
most recent commit 4 years ago
Bioinformatics One Liners ⭐ 5
📝 Useful bioinformatics one-line commands.
most recent commit 10 months ago
Biomisc ⭐ 5
collection of miscellaneous command line bioinformatic scripts
most recent commit 3 months ago
Nodefinder ⭐ 5
Tools for node related operations in phylogenetic analyses.
most recent commit 7 years ago
Bionitio Clojure ⭐ 4
Demonstrating best practices for bioinformatics command line tools
most recent commit a year ago
Intspan ⭐ 3
Command line tools for IntSpan related bioinformatics operations
most recent commit 6 months ago
Genetic Code Analysis Toolkit ⭐ 3
GCAT - Genetic Code Analysis Toolkit
most recent commit 5 years ago
Brassica Napus Bulk Segregant ⭐ 2
Scripts used to perform bulk segregant analysis in Brassica napus
most recent commit 4 years ago
Bionitio R ⭐ 2
Demonstrating best practices for bioinformatics command line tools
most recent commit 4 years ago
The 6 Latest Releases In Line Bioinformatics Open Source Projects
Cromwell Cli ⭐ 11
Command-line interface for Cromwell server :pig2:
total releases 22latest release February 03, 2022most recent commit a month ago
Rush ⭐ 608
A cross-platform command-line tool for executing jobs in parallel
total releases 26latest release April 30, 2021most recent commit 7 months ago
Seqtk ⭐ 1,101
Toolkit for processing sequences in FASTA/Q formats
total releases 1latest release March 03, 2021most recent commit a month ago
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1latest release March 03, 2021most recent commit 7 months ago
Cuneiform ⭐ 210
Cuneiform distributed programming language
total releases 5latest release November 19, 2018most recent commit a day ago
Bionode Fasta ⭐ 13
Streamable FASTA parser.
dependent packages 3total releases 13latest release April 25, 2017most recent commit 3 years agonpm bionode-fasta} Downloads
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