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The Top 23 Python Jupyter Notebook Bioinformatics Open Source Projects

Open source projects categorized as Python Jupyter Notebook Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Data Processing > Jupyter Notebook
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174most recent commit 3 months agopypi dash} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29most recent commit 4 months agopypi graphein} Downloads
Pydna ⭐ 140
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
dependent packages 7total releases 110most recent commit 4 months agopypi pydna} Downloads
Rna Tools ⭐ 129
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
total releases 110most recent commit 3 months ago
Tutorial ⭐ 94
Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)
most recent commit 3 months ago
Coursera Specializations ⭐ 68
Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody
most recent commit 6 years ago
Chembl Downloader ⭐ 55
Write reproducible code for getting and processing ChEMBL
most recent commit 3 months ago
Full_spectrum_bioinformatics ⭐ 47
An open-access bioinformatics text
most recent commit 3 months ago
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9most recent commit 4 months agopypi glycowork} Downloads
Vrs Python ⭐ 44
GA4GH Variation Representation Python Implementation
dependent packages 7total releases 48most recent commit 3 months agopypi ga4gh.vrs} Downloads
Eugene ⭐ 44
Elucidating the Utility of Genomic Elements with Neural Nets
most recent commit 5 months ago
Learn Bioinformatics ⭐ 43
List of resources for learning bioinformatics, from beginner to advanced
most recent commit 6 years ago
Genepattern Notebook ⭐ 41
Platform for integrating genomic analysis with Jupyter Notebooks.
dependent packages 1total releases 63most recent commit 6 months agopypi genepattern-notebook} Downloads
Biokit ⭐ 40
Bioinformatics in Python
total releases 24most recent commit 3 years ago
Biopython Coronavirus ⭐ 39
Biopython Jupyter Notebook tutorial to characterize a small genome
most recent commit 4 years ago
Bisqueucsb ⭐ 33
An ML Platform for storing, analyzing, and visualizing your data all in the browser.
total releases 2most recent commit 5 months ago
Stratipy ⭐ 29
Graph regularized nonnegative matrix factorization (GNMF) in Python
most recent commit 4 years ago
Directlfq ⭐ 27
Fast and accurate label-free quantification for small and very large numbers of proteomes
most recent commit 3 months ago
Virnet ⭐ 26
VirNet: A deep attention model for viral reads identification
most recent commit 2 years ago
Calour ⭐ 23
exploratory and interactive microbiome analyses based on heatmaps
most recent commit a year ago
Sequencework ⭐ 22
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
most recent commit 3 months ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Ai For Bio ⭐ 21
A free and collaborative space for Machine Learning applied to Biology
most recent commit 4 months ago
The 7 Most Depended On Python Jupyter Notebook Bioinformatics Open Source Projects
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Vrs Python ⭐ 44
GA4GH Variation Representation Python Implementation
dependent packages 7total releases 48latest release November 09, 2023most recent commit 3 months agopypi ga4gh.vrs} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
Genepattern Notebook ⭐ 41
Platform for integrating genomic analysis with Jupyter Notebooks.
dependent packages 1total releases 63latest release November 03, 2023most recent commit 6 months agopypi genepattern-notebook} Downloads
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9latest release August 27, 2023most recent commit 4 months agopypi glycowork} Downloads
Fadapa ⭐ 16
FAstqc DAta PArser - A minimal parser to parse FastQC output data.
dependent packages 1total releases 4latest release November 04, 2014most recent commit 8 years agopypi fadapa} Downloads
The 10 Latest Releases In Python Jupyter Notebook Bioinformatics Open Source Projects
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Candycrunch ⭐ 7
Predicting glycan structure from LC-MS/MS data
total releases 6latest release November 16, 2023most recent commit 3 months ago
Vrs Python ⭐ 44
GA4GH Variation Representation Python Implementation
dependent packages 7total releases 48latest release November 09, 2023most recent commit 3 months agopypi ga4gh.vrs} Downloads
Genepattern Notebook ⭐ 41
Platform for integrating genomic analysis with Jupyter Notebooks.
dependent packages 1total releases 63latest release November 03, 2023most recent commit 6 months agopypi genepattern-notebook} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9latest release August 27, 2023most recent commit 4 months agopypi glycowork} Downloads
Symphonypy ⭐ 19
Port of symphony algorithm of single-cell reference atlas mapping to Python
total releases 3latest release January 26, 2023most recent commit 8 months ago
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