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The Top 23 Jupyter Notebook Bioinformatics Open Source Projects

Open source projects categorized as Jupyter Notebook Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Data Processing > Jupyter Notebook
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174most recent commit 3 months agopypi dash} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29most recent commit 4 months agopypi graphein} Downloads
Tdc ⭐ 889
Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science
dependent packages 4total releases 32most recent commit 4 months agopypi PyTDC} Downloads
Deeppurpose ⭐ 826
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
total releases 13most recent commit 6 months ago
Simple Gpu ⭐ 432
🦒 Functional WebGPU
most recent commit 3 months ago
Allensdk ⭐ 314
code for reading and processing Allen Institute for Brain Science data
dependent packages 23total releases 81most recent commit 5 months agopypi allensdk} Downloads
Primekg ⭐ 269
Precision Medicine Knowledge Graph (PrimeKG)
most recent commit 4 months ago
Training Modules ⭐ 260
Materials for short, half-day workshops
most recent commit 3 months ago
Serratus ⭐ 219
Ultra-deep search for novel viruses
most recent commit a year ago
Gcp Essentials ⭐ 208
Sample code and notes for my GCP courses on LinkedIn Learning
most recent commit 3 months ago
Janggu ⭐ 205
Deep learning infrastructure for genomics
total releases 19most recent commit 3 years ago
Gcp For Bioinformatics ⭐ 178
GCP for Bioinformatics Researchers
most recent commit 3 months ago
Pywgcna ⭐ 160
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
total releases 121most recent commit 3 months ago
Omicverse ⭐ 159
A python library for multi omics included bulk and single cell RNA-seq analysis.
dependent packages 2total releases 32most recent commit 3 months agopypi Pyomic} Downloads
Pydna ⭐ 140
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
dependent packages 7total releases 110most recent commit 4 months agopypi pydna} Downloads
Rna Tools ⭐ 129
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
total releases 110most recent commit 3 months ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Block Aligner ⭐ 111
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
total releases 10most recent commit 7 months ago
Peddy ⭐ 104
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
most recent commit 3 years ago
Geoparse ⭐ 98
Python library to access Gene Expression Omnibus Database (GEO)
dependent packages 9total releases 23most recent commit 3 years agopypi GEOparse} Downloads
Biojupies ⭐ 94
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
most recent commit 2 years ago
Tutorial ⭐ 94
Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)
most recent commit 3 months ago
Vrs ⭐ 73
Extensible specification for representing and uniquely identifying biological sequence variation
most recent commit 3 months ago
The 10 Most Depended On Jupyter Notebook Bioinformatics Open Source Projects
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Allensdk ⭐ 314
code for reading and processing Allen Institute for Brain Science data
dependent packages 23total releases 81latest release November 30, 2023most recent commit 5 months agopypi allensdk} Downloads
Geoparse ⭐ 98
Python library to access Gene Expression Omnibus Database (GEO)
dependent packages 9total releases 23latest release February 03, 2021most recent commit 3 years agopypi GEOparse} Downloads
Vrs Python ⭐ 44
GA4GH Variation Representation Python Implementation
dependent packages 7total releases 48latest release November 09, 2023most recent commit 3 months agopypi ga4gh.vrs} Downloads
Tdc ⭐ 889
Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science
dependent packages 4total releases 32latest release January 27, 2023most recent commit 4 months agopypi PyTDC} Downloads
Omicverse ⭐ 159
A python library for multi omics included bulk and single cell RNA-seq analysis.
dependent packages 2total releases 32latest release October 05, 2022most recent commit 3 months agopypi Pyomic} Downloads
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9latest release August 27, 2023most recent commit 4 months agopypi glycowork} Downloads
Codonadaptationindex ⭐ 17
Python Implementation of Codon Adaption Index
dependent packages 1total releases 8latest release October 11, 2018most recent commit 2 years agopypi CAI} Downloads
Genepattern Notebook ⭐ 41
Platform for integrating genomic analysis with Jupyter Notebooks.
dependent packages 1total releases 63latest release November 03, 2023most recent commit 5 months agopypi genepattern-notebook} Downloads
The 10 Latest Releases In Jupyter Notebook Bioinformatics Open Source Projects
Pywgcna ⭐ 160
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
total releases 121latest release December 04, 2023most recent commit 3 months ago
Allensdk ⭐ 314
code for reading and processing Allen Institute for Brain Science data
dependent packages 23total releases 81latest release November 30, 2023most recent commit 5 months agopypi allensdk} Downloads
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Candycrunch ⭐ 7
Predicting glycan structure from LC-MS/MS data
total releases 6latest release November 16, 2023most recent commit 3 months ago
Vrs Python ⭐ 44
GA4GH Variation Representation Python Implementation
dependent packages 7total releases 48latest release November 09, 2023most recent commit 3 months agopypi ga4gh.vrs} Downloads
Genepattern Notebook ⭐ 41
Platform for integrating genomic analysis with Jupyter Notebooks.
dependent packages 1total releases 63latest release November 03, 2023most recent commit 5 months agopypi genepattern-notebook} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
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