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The Top 21 Bioinformatics Interaction Open Source Projects

Open source projects categorized as Bioinformatics Interaction
Categories > Data Processing > Bioinformatics
Categories > Interaction
Plip ⭐ 320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
dependent packages 1total releases 25most recent commit 8 months agopypi plip} Downloads
Globalbioticinteractions ⭐ 114
Global Biotic Interactions provides access to existing species interaction datasets
most recent commit 3 months ago
Coolpuppy ⭐ 66
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
total releases 23most recent commit 3 months ago
Neodti ⭐ 54
NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions
most recent commit 3 years ago
Pathway Mapper ⭐ 52
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
dependent packages 2total releases 15most recent commit a year agonpm pathway-mapper} Downloads
Cell2cell ⭐ 44
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
most recent commit 4 months ago
Intarna ⭐ 41
Efficient target prediction incorporating accessibility of interaction sites
most recent commit 3 months ago
Rna Playground ⭐ 34
Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
most recent commit 3 months ago
Pycontact ⭐ 34
Analysis of non-covalent interactions in MD trajectories
total releases 2most recent commit a year ago
Arpeggio ⭐ 33
Calculation of interatomic interactions in molecular structures
most recent commit 3 years ago
Tadlib ⭐ 23
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
total releases 31most recent commit 2 years ago
Electrostatics.github.io ⭐ 23
APBS & PDB2PQR - software for biomolecular electrostatics and solvation
most recent commit 2 years ago
Netsmooth ⭐ 18
netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
most recent commit 4 years ago
Chia Pet_tool_v3 ⭐ 13
ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster and visulization
most recent commit 3 months ago
Fingernat ⭐ 12
Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
most recent commit 2 years ago
Man ⭐ 6
Codes and data for the paper entitled "Learning representations to predict intermolecular interactions on large-scale heterogeneous molecular association network"
most recent commit 2 years ago
Rnpfind ⭐ 6
Bioinformatics tool for exploring RNA-Protein interactions
most recent commit 4 months ago
Hbind ⭐ 5
Calculates hydrogen-bond interaction tables for protein-small molecule complexes, based on protein PDB and protonated ligand MOL2 structure input. Raschka et al. (2018) J. Computer-Aided Molec. Design
most recent commit 4 years ago
Schmidt_et_al_2016_community_similarity ⭐ 5
Analysis code for a manuscript on community similarity computation
most recent commit 5 years ago
Ppaxe ⭐ 5
Text mining tool to retrieve protein-protein interactions from the scientific literature.
total releases 4most recent commit 5 years ago
Vizsnp St ⭐ 5
Visualizing the effect of SNPs on protein structure using iCn3D
most recent commit a year ago
The 2 Most Depended On Bioinformatics Interaction Open Source Projects
The 6 Latest Releases In Bioinformatics Interaction Open Source Projects
Coolpuppy ⭐ 66
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
total releases 23latest release July 11, 2023most recent commit 3 months ago
Pathway Mapper ⭐ 52
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
dependent packages 2total releases 15latest release May 26, 2023most recent commit a year agonpm pathway-mapper} Downloads
Tadlib ⭐ 23
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
total releases 31latest release September 20, 2022most recent commit 2 years ago
Pycontact ⭐ 34
Analysis of non-covalent interactions in MD trajectories
total releases 2latest release September 01, 2020most recent commit a year ago
Ppaxe ⭐ 5
Text mining tool to retrieve protein-protein interactions from the scientific literature.
total releases 4latest release March 22, 2019most recent commit 5 years ago
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