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The Top 23 Bioinformatics Illumina Open Source Projects

Open source projects categorized as Bioinformatics Illumina
Categories > Data Processing > Bioinformatics
Categories > Illumina
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 6 months ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Strobealign ⭐ 114
Aligns short reads using dynamic seed size with strobemers
most recent commit 3 months ago
Taxprofiler ⭐ 78
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
most recent commit 3 months ago
Fq ⭐ 54
Command line utility for manipulating Illumina-generated FASTQ files.
total releases 3most recent commit 4 months ago
Sample Sheet ⭐ 45
Parse Illumina sample sheets with Python
dependent packages 3total releases 19most recent commit 6 months agopypi sample-sheet} Downloads
Aldy ⭐ 43
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
most recent commit 5 months ago
Clairs ⭐ 42
ClairS - a deep-learning method for long-read somatic small variant calling
most recent commit 3 months ago
Awesome Sequencing Tech Papers ⭐ 26
A collection of publications on comparison of high-throughput sequencing technologies.
most recent commit 5 months ago
Ngs Preprocess ⭐ 23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
most recent commit 3 months ago
Seqmaker.jl ⭐ 19
(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated
most recent commit 7 years ago
Clairs To ⭐ 18
ClairS-TO - a deep-learning method for tumor-only somatic SNV calling
most recent commit 3 months ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
S4 Clarity Lib ⭐ 16
A modern Python library for BaseSpace Clarity LIMS.
most recent commit 9 months ago
Rmap ⭐ 15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
most recent commit 5 months ago
Grandeur ⭐ 13
UPHL's Reference Free Pipeline
most recent commit 4 months ago
Digestiflow Server ⭐ 13
🍸 Web-based database system for flow cell management (incl. REST API)
most recent commit 2 years ago
Chimerate ⭐ 12
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
most recent commit 4 months ago
16s Rdna V3 V4 ⭐ 8
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
most recent commit 3 years ago
Agaat ⭐ 7
Automated Tool for Global Screening Array analysis
most recent commit 6 months ago
Ampligone ⭐ 6
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
total releases 8most recent commit 8 months ago
Slim ⭐ 6
A web app for environmental DNA metabarcoding analysis
most recent commit 2 years ago
Kit4b ⭐ 5
A fully integrated K-mer Informed Toolkit for Bioinformatics
most recent commit 6 months ago
The 4 Latest Releases In Bioinformatics Illumina Open Source Projects
Ampligone ⭐ 6
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
total releases 8latest release August 08, 2023most recent commit 8 months ago
Sample Sheet ⭐ 45
Parse Illumina sample sheets with Python
dependent packages 3total releases 19latest release August 12, 2022most recent commit 6 months agopypi sample-sheet} Downloads
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1latest release December 15, 2021most recent commit 6 months ago
Fq ⭐ 54
Command line utility for manipulating Illumina-generated FASTQ files.
total releases 3latest release April 22, 2018most recent commit 4 months ago
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