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The Top 20 Groovy Bioinformatics Open Source Projects

Open source projects categorized as Groovy Bioinformatics
Categories > Data Processing > Bioinformatics
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250most recent commit 3 months ago
Bpipe ⭐ 220
Bpipe - a tool for running and managing bioinformatics pipelines
most recent commit 7 months ago
P2rank ⭐ 193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
most recent commit 3 months ago
Vdjdb Db ⭐ 122
🗂️ [vdjdb.cdr3.net is down for maintenance] Git-based TCR database storage & management. Submissions welcome!
most recent commit 6 months ago
Vdjtools ⭐ 113
Post-analysis of immune repertoire sequencing data
most recent commit 10 months ago
Cytomine Core ⭐ 73
Cytomine-Core is the main web server implementing the Cytomine API
most recent commit a year ago
Asap ⭐ 46
A scalable bacterial genome assembly, annotation and analysis pipeline
most recent commit 2 years ago
Migec ⭐ 40
A RepSeq processing swiss-knife
most recent commit 10 months ago
Migmap ⭐ 38
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
most recent commit 6 years ago
Bionextflow ⭐ 22
A collection of modules and sub-workflows for Nextflow
most recent commit 3 months ago
Bactpipe ⭐ 17
BACTpipe: An assembly and annotation pipeline for bacterial genomics
most recent commit 2 years ago
Cytomine Ims ⭐ 13
Cytomine-IMS: Image Management System
most recent commit 2 years ago
Bacting ⭐ 11
Bacting := acting as the Bioclipse TNG
dependent packages 14total releases 47most recent commit 3 months ago
Rnaseq ⭐ 8
Fast RNAseq pipeline
most recent commit a year ago
Cytomine Tools ⭐ 8
Cytomine toolbox
most recent commit 4 years ago
Nf Tenx ⭐ 7
All 10x Genomics processing pipelines rolled into one containerized pipelines
most recent commit 4 months ago
Cytomine Software Router ⭐ 7
Cytomine module for communication between Cytomine-Core and remote algorithms
most recent commit 2 years ago
Configbuilder Nf ⭐ 6
Nextflow config builder scripts for supported HPC infrastructures.
most recent commit 3 months ago
Cytomine Dotslidetools ⭐ 5
dotslide2tiff tools
most recent commit 7 years ago
Bulkrna ⭐ 5
Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data
most recent commit a year ago
The 2 Most Depended On Groovy Bioinformatics Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Bacting ⭐ 11
Bacting := acting as the Bioclipse TNG
dependent packages 14total releases 47latest release November 05, 2023most recent commit 3 months ago
The 2 Latest Releases In Groovy Bioinformatics Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Bacting ⭐ 11
Bacting := acting as the Bioclipse TNG
dependent packages 14total releases 47latest release November 05, 2023most recent commit 3 months ago
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