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The Top 23 Bioinformatics Genomics Open Source Projects

Open source projects categorized as Bioinformatics Genomics
Categories > Data Processing > Bioinformatics
Categories > Science > Genomics
Fastq.bio ⭐ 93
An interactive web tool for quality control of DNA sequencing data
most recent commit a year ago
Bwa Meme ⭐ 92
BWA-MEME: Faster BWA-MEM2 using learned-index
most recent commit 6 months ago
Assembly Stats ⭐ 92
Get assembly statistics from FASTA and FASTQ files
most recent commit a year ago
Dolphinnext ⭐ 92
A graphical user interface for distributed data processing of high throughput genomics
most recent commit a year ago
Fermikit ⭐ 91
De novo assembly based variant calling pipeline for Illumina short reads
most recent commit 3 years ago
Earlgrey ⭐ 90
Earl Grey: A fully automated TE curation and annotation pipeline
most recent commit 3 months ago
Genomicsdb ⭐ 88
High performance data storage for importing, querying and transforming variants.
dependent packages 2total releases 35most recent commit 3 months ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Mccortex ⭐ 86
De novo genome assembly and multisample variant calling
most recent commit 5 years ago
Scarf ⭐ 83
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
dependent packages 1total releases 43most recent commit 3 months agopypi scarf} Downloads
Aioli ⭐ 83
Framework for building fast genomics web tools with WebAssembly and WebWorkers
dependent packages 4total releases 24most recent commit 6 months agonpm @biowasm/aioli} Downloads
Awesome 10x Genomics ⭐ 81
List of tools and resources related to the 10x Genomics GEMCode/Chromium system
most recent commit 5 years ago
Genomicdatacommons ⭐ 80
Provide R access to the NCI Genomic Data Commons portal.
most recent commit 3 months ago
Tiledb Vcf ⭐ 79
Efficient variant-call data storage and retrieval library using the TileDB storage library.
most recent commit 3 months ago
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18most recent commit 3 months agopypi cogent3} Downloads
Svtyper ⭐ 78
Bayesian genotyper for structural variants
dependent packages 1total releases 4most recent commit 4 years agopypi svtyper} Downloads
Genomics ⭐ 78
Scripts, utilities and programs for genomic bioinformatics.
most recent commit 4 months ago
R Bioinformatics Cookbook ⭐ 76
R Bioinformatics Cookbook, published by Packt
most recent commit a year ago
Bgt ⭐ 76
Flexible genotype query among 30,000+ samples whole-genome
most recent commit 5 years ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Nthash ⭐ 76
Fast hash function for DNA/RNA sequences
most recent commit 9 months ago
Ohmnet ⭐ 75
OhmNet: Representation learning in multi-layer graphs
most recent commit 4 years ago
Czid Web ⭐ 75
Infectious Disease Sequencing Platform
most recent commit 3 months ago
The 10 Latest Releases In Bioinformatics Genomics Open Source Projects
Clustassess ⭐ 13
Tools for assessing clustering robustness
total releases 3latest release January 26, 2022most recent commit 2 years ago
Wfpm ⭐ 9
WorkFlow Package Manager
total releases 34latest release January 14, 2022most recent commit 5 months ago
Minimap2 ⭐ 1,613
A versatile pairwise aligner for genomic and spliced nucleotide sequences
dependent packages 32total releases 27latest release December 26, 2021most recent commit 3 months agopypi mappy} Downloads
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Ga4gh Server ⭐ 95
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
total releases 18latest release December 15, 2021most recent commit 6 years ago
Oliver ⭐ 36
An opinionated Cromwell orchestration manager.
total releases 27latest release November 20, 2021most recent commit a year ago
Snipgenie ⭐ 6
command line and desktop tool for microbial variant calling
total releases 2latest release November 01, 2021most recent commit 4 months ago
Seqr ⭐ 8
fast and comprehensive k-mer counting package
total releases 1latest release September 15, 2021most recent commit 3 years ago
Wdldoc ⭐ 26
Create WDL documentation using Markdown.
total releases 14latest release September 10, 2021most recent commit a year ago
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