Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Bioinformatics Genomics Vcf Open Source Projects

Open source projects categorized as Bioinformatics Genomics Vcf
Categories > Data Processing > Bioinformatics
Categories > Science > Genomics
Categories > Science > Vcf
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18most recent commit 3 years agopypi google-nucleus} Downloads
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Cyvcf2 ⭐ 345
cython + htslib == fast VCF and BCF processing
dependent packages 46total releases 90most recent commit 3 months agopypi cyvcf2} Downloads
Vcfanno ⭐ 334
annotate a VCF with other VCFs/BEDs/tabixed files
dependent packages 1total releases 41most recent commit 5 months ago
Truvari ⭐ 284
Structural variant toolkit for VCFs
total releases 23most recent commit 17 days ago
Hap.py ⭐ 283
Haplotype VCF comparison tools
most recent commit 2 years ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Somalier ⭐ 224
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
most recent commit 7 months ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Peddy ⭐ 104
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
most recent commit 3 years ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Tiledb Vcf ⭐ 79
Efficient variant-call data storage and retrieval library using the TileDB storage library.
most recent commit 3 months ago
Svtyper ⭐ 78
Bayesian genotyper for structural variants
dependent packages 1total releases 4most recent commit 4 years agopypi svtyper} Downloads
Bgt ⭐ 76
Flexible genotype query among 30,000+ samples whole-genome
most recent commit 5 years ago
Vcfdist ⭐ 48
vcfdist: Accurately benchmarking phased variant calls
most recent commit 3 months ago
Hts Nim Tools ⭐ 41
useful command-line tools written to show-case hts-nim
most recent commit 3 years ago
Gor ⭐ 37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
most recent commit 4 months ago
Varsome Api Client Python ⭐ 26
Example client programs for Saphetor's VarSome annotation API
most recent commit 6 months ago
Cutevcf ⭐ 23
simple viewer for variant call format using htslib
most recent commit 7 years ago
Iliad ⭐ 21
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
most recent commit 4 months ago
Cmdbtools ⭐ 21
Command line tools for CMDB varaints browser
total releases 14most recent commit 2 years ago
Sv Pipeline ⭐ 21
Pipeline for structural variation detection in cohorts
most recent commit 4 years ago
The 5 Most Depended On Bioinformatics Genomics Vcf Open Source Projects
Cyvcf2 ⭐ 345
cython + htslib == fast VCF and BCF processing
dependent packages 46total releases 90latest release December 11, 2023most recent commit 3 months agopypi cyvcf2} Downloads
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18latest release August 31, 2021most recent commit 3 years agopypi google-nucleus} Downloads
Vcfanno ⭐ 334
annotate a VCF with other VCFs/BEDs/tabixed files
dependent packages 1total releases 41latest release November 29, 2022most recent commit 5 months ago
Svtyper ⭐ 78
Bayesian genotyper for structural variants
dependent packages 1total releases 4latest release September 04, 2019most recent commit 4 years agopypi svtyper} Downloads
The 10 Latest Releases In Bioinformatics Genomics Vcf Open Source Projects
Cyvcf2 ⭐ 345
cython + htslib == fast VCF and BCF processing
dependent packages 46total releases 90latest release December 11, 2023most recent commit 3 months agopypi cyvcf2} Downloads
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Truvari ⭐ 284
Structural variant toolkit for VCFs
total releases 23latest release August 07, 2023most recent commit 17 days ago
Vcfanno ⭐ 334
annotate a VCF with other VCFs/BEDs/tabixed files
dependent packages 1total releases 41latest release November 29, 2022most recent commit 5 months ago
Cmdbtools ⭐ 21
Command line tools for CMDB varaints browser
total releases 14latest release July 06, 2022most recent commit 2 years ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18latest release August 31, 2021most recent commit 3 years agopypi google-nucleus} Downloads
Svtyper ⭐ 78
Bayesian genotyper for structural variants
dependent packages 1total releases 4latest release September 04, 2019most recent commit 4 years agopypi svtyper} Downloads
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
Popular Data Processing Categories
Jupyter Notebook
Dataset
Sql
Validation
Pipeline
Translation
Data Science
Classification
Transaction
Scraper
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.