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The Top 16 Bioinformatics Genomics Rna Seq Open Source Projects

Open source projects categorized as Bioinformatics Genomics Rna Seq
Categories > Data Processing > Bioinformatics
Categories > Science > Genomics
Categories > Rna Seq
Deeptools ⭐ 644
Tools to process and analyze deep sequencing data.
most recent commit 16 days ago
Dolphinnext ⭐ 92
A graphical user interface for distributed data processing of high throughput genomics
most recent commit a year ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Rattle ⭐ 51
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
most recent commit 4 months ago
Dee2 ⭐ 37
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
most recent commit 8 months ago
Genome Annotation Pipeline ⭐ 36
Genome annotation pipeline
most recent commit 4 months ago
Circrna ⭐ 32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
most recent commit 3 months ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29most recent commit a year ago
Smallrnaseq ⭐ 26
small rna-seq analysis package
total releases 6most recent commit a year ago
Vigen ⭐ 24
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
most recent commit a year ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Atacr ⭐ 12
Analysing Capture Seq Count Data
most recent commit 6 years ago
Bioinformatics ⭐ 10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
most recent commit 6 months ago
Metafusion ⭐ 7
most recent commit 7 months ago
Pyfeat 2.x ⭐ 6
Biological Feature Representation Tool form the Sequences
most recent commit 2 years ago
Ipsa Nf ⭐ 5
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
most recent commit 5 years ago
The 2 Latest Releases In Bioinformatics Genomics Rna Seq Open Source Projects
Smallrnaseq ⭐ 26
small rna-seq analysis package
total releases 6latest release October 23, 2020most recent commit a year ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29latest release September 21, 2018most recent commit a year ago
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