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The Top 23 Python Bioinformatics Genomics Open Source Projects

Open source projects categorized as Python Bioinformatics Genomics
Categories > Data Processing > Bioinformatics
Categories > Science > Genomics
Kgwasflow ⭐ 19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
most recent commit 7 months ago
Hts Python ⭐ 18
pythonic wrapper for htslib
most recent commit 7 years ago
Clairs To ⭐ 18
ClairS-TO - a deep-learning method for tumor-only somatic SNV calling
most recent commit 3 months ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Pyfamsa ⭐ 17
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
total releases 5most recent commit 3 months ago
Pypop ⭐ 17
PyPop: Python for Population Genomics
most recent commit 3 months ago
Pywfa ⭐ 17
Python wrapper for wavefront alignment using WFA2-lib
total releases 11most recent commit 10 months ago
Jloh ⭐ 17
A tool to extract LOH blocks from VCF, BAM and FASTA data
most recent commit 6 months ago
Metarna ⭐ 17
Find target sites for the miRNAs in genomic sequences
total releases 6most recent commit 7 years ago
Fgpyo ⭐ 17
Quality of life improvements for Bioinformatics in Python.
most recent commit 4 months ago
Make_lastz_chains ⭐ 17
Portable solution to generate genome alignment chains using lastz
most recent commit 6 months ago
Ngcgh ⭐ 17
Tools for producing pseudo-cgh of next-generation sequencing data
total releases 14most recent commit 8 years ago
Physlr ⭐ 17
⛓️ Construct a Physical Map from Linked Reads
most recent commit a year ago
Adapt ⭐ 16
A package for designing activity-informed nucleic acid diagnostics for viruses.
total releases 6most recent commit a year ago
Orthosnap ⭐ 16
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
total releases 6most recent commit 4 months ago
Icallsv ⭐ 16
A Framework to call Structural Variants from NGS based datasets
total releases 1most recent commit 6 years ago
Plasmidtron ⭐ 16
Assembling the cause of phenotypes and genotypes from NGS data
most recent commit 4 years ago
Bioutils ⭐ 16
provides common tools and lookup tables used primarily by the hgvs and uta packages
dependent packages 8total releases 62most recent commit 3 months agopypi bioutils} Downloads
Gambit ⭐ 16
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
most recent commit 5 months ago
Driverpower ⭐ 15
DriverPower
total releases 6most recent commit 4 years ago
Manhattan_generator ⭐ 15
Manhattan plot Generator
most recent commit 6 years ago
Pytrimal ⭐ 15
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
total releases 16most recent commit 5 months ago
Hicreppy ⭐ 14
Python reimplementation of hicrep with compatibility for sparse matrices
most recent commit a year ago
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