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The Top 22 Perl Bioinformatics Genomics Open Source Projects

Open source projects categorized as Perl Bioinformatics Genomics
Categories > Data Processing > Bioinformatics
Categories > Science > Genomics
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83most recent commit 2 years ago
Edge ⭐ 70
EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
most recent commit 2 years ago
Raptor ⭐ 50
Graph-based mapping of long sequences, noisy or HiFi.
most recent commit 4 years ago
Assembly_improvement ⭐ 39
Improve the quality of a denovo assembly by scaffolding and gap filling
most recent commit 4 years ago
Genome Annotation Pipeline ⭐ 36
Genome annotation pipeline
most recent commit 4 months ago
Pgcgap ⭐ 29
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
most recent commit a year ago
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Panpop ⭐ 24
Application of pan-genome for population
most recent commit 3 months ago
Wgs2ncbi ⭐ 18
Toolkit for preparing genomes for submission to NCBI
most recent commit 3 years ago
Starfish ⭐ 16
starfish: a modular toolkit for giant mobile element annotation
most recent commit 4 months ago
Bio Tradis ⭐ 15
A set of tools to analyse the output from TraDIS analyses
total releases 14most recent commit 9 months ago
Mlst_check ⭐ 14
Multilocus sequence typing by blast using the schemes from PubMLST
total releases 13most recent commit 3 years ago
Phastaf ⭐ 14
Identify phage regions in bacterial genomes for masking purposes
most recent commit 5 years ago
Berokka ⭐ 12
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
most recent commit 5 years ago
Positive Selection ⭐ 10
Scripts and procedures for detecting positively selected genes and codons in primates
most recent commit 3 years ago
Popgen ⭐ 7
Small scripts for population genetics analysis
most recent commit a year ago
Cg Pipeline ⭐ 6
Genome assembly/prediction/annotation pipeline for the Linux command line
most recent commit 5 years ago
Nf Repeatmasking ⭐ 5
Nextflow workflow for automatic repeat detection, classification and masking
most recent commit 6 years ago
Junkimlabtutorial ⭐ 5
충남대학교 김준 연구실 튜토리얼
most recent commit 7 months ago
Ipsa Nf ⭐ 5
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
most recent commit 5 years ago
The 4 Latest Releases In Perl Bioinformatics Genomics Open Source Projects
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Bio Tradis ⭐ 15
A set of tools to analyse the output from TraDIS analyses
total releases 14latest release December 04, 2019most recent commit 9 months ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83latest release November 06, 2019most recent commit 2 years ago
Mlst_check ⭐ 14
Multilocus sequence typing by blast using the schemes from PubMLST
total releases 13latest release March 03, 2017most recent commit 3 years ago
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