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The Top 20 Java Bioinformatics Genomics Open Source Projects

Open source projects categorized as Java Bioinformatics Genomics
Categories > Data Processing > Bioinformatics
Categories > Science > Genomics
Adam ⭐ 966
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
dependent packages 17total releases 14most recent commit 3 months ago
Biojava ⭐ 564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
dependent packages 16total releases 56most recent commit 3 months ago
Jvarkit ⭐ 440
Java utilities for Bioinformatics
most recent commit 6 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Artemis ⭐ 191
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
most recent commit a year ago
Dnanalyzer ⭐ 122
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
most recent commit 5 months ago
Biojava Tutorial ⭐ 111
📖📚An introductory tutorial for BioJava
most recent commit 3 months ago
Genomicsdb ⭐ 88
High performance data storage for importing, querying and transforming variants.
dependent packages 2total releases 35most recent commit 3 months ago
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4most recent commit 6 years ago
Gor ⭐ 37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
most recent commit 4 months ago
Cgview ⭐ 30
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
most recent commit 8 months ago
Svanna ⭐ 25
Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
most recent commit 5 months ago
Ufcg ⭐ 20
UFCG: Universal Fungal Core Genes
most recent commit 6 months ago
Gemma ⭐ 17
Genomics data re-analysis
most recent commit 3 months ago
Omicssuite.github.io ⭐ 15
OmicsSuite website for releasing new version.
most recent commit 3 months ago
Chia Pet_tool_v3 ⭐ 13
ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster and visulization
most recent commit 4 months ago
Bacnet ⭐ 12
BACNET is a Java based platform to develop website for multi-omics analysis
most recent commit a year ago
Gluetools ⭐ 9
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
most recent commit 5 months ago
Pygmql ⭐ 9
Python Library for data analysis based on GMQL
total releases 16most recent commit 2 years ago
Bamscope ⭐ 7
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments.
most recent commit 4 months ago
The 5 Most Depended On Java Bioinformatics Genomics Open Source Projects
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4latest release May 29, 2016most recent commit 6 years ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Genomicsdb ⭐ 88
High performance data storage for importing, querying and transforming variants.
dependent packages 2total releases 35latest release October 12, 2023most recent commit 3 months ago
The 6 Latest Releases In Java Bioinformatics Genomics Open Source Projects
Genomicsdb ⭐ 88
High performance data storage for importing, querying and transforming variants.
dependent packages 2total releases 35latest release October 12, 2023most recent commit 3 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Pygmql ⭐ 9
Python Library for data analysis based on GMQL
total releases 16latest release June 19, 2019most recent commit 2 years ago
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4latest release May 29, 2016most recent commit 6 years ago
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