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The Top 23 Bioinformatics Genetics Open Source Projects

Open source projects categorized as Bioinformatics Genetics
Categories > Data Processing > Bioinformatics
Categories > Genetics
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32most recent commit 4 months agopypi cellrank} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Gwa_tutorial ⭐ 184
A comprehensive tutorial about GWAS and PRS
most recent commit 4 years ago
Graphtyper ⭐ 156
Population-scale genotyping using pangenome graphs
most recent commit 3 months ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38most recent commit a year ago
Molgenis ⭐ 106
MOLGENIS - for scientific data: management, exploration, integration and analysis.
dependent packages 39total releases 98most recent commit 4 months ago
Verifybamid ⭐ 78
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
most recent commit 3 months ago
Geneticsmakie.jl ⭐ 66
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
most recent commit 3 months ago
Xpclr ⭐ 64
Code to compute the XP-CLR statistic to infer natural selection
most recent commit 2 years ago
Awesome Genetics ⭐ 62
A curated list of awesome bioinformatics software.
most recent commit 2 years ago
Awesome Structural Bioinformatics ⭐ 54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
most recent commit a year ago
Genotify ⭐ 51
A minimal desktop app for easy and convenient gene annotation.
most recent commit 4 years ago
Tomahawk ⭐ 39
Fast calculations of linkage-disequilibrium in large-scale human cohorts
most recent commit 4 years ago
Dee2 ⭐ 37
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
most recent commit 8 months ago
Gor ⭐ 37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
most recent commit 4 months ago
Locuszoom Standalone ⭐ 30
Create regional association plots from GWAS or meta-analysis
most recent commit 4 years ago
Orthoevolution ⭐ 28
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
total releases 2most recent commit a year ago
Genipe ⭐ 26
Genome-wide imputation pipeline
total releases 13most recent commit 3 years ago
Autopvs1 ⭐ 23
An automatic classification tool for PVS1 interpretation of null variants
most recent commit 2 years ago
Iliad ⭐ 21
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
most recent commit 4 months ago
Genomeanalysismodule ⭐ 21
Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.
most recent commit a year ago
Msabrowser ⭐ 21
🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
most recent commit 2 years ago
The 7 Most Depended On Bioinformatics Genetics Open Source Projects
Molgenis ⭐ 106
MOLGENIS - for scientific data: management, exploration, integration and analysis.
dependent packages 39total releases 98latest release August 03, 2020most recent commit 4 months ago
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Pyplink ⭐ 14
Python module to read binary Plink files.
dependent packages 2total releases 12latest release February 20, 2018most recent commit a year agopypi pyplink} Downloads
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Codonadaptationindex ⭐ 17
Python Implementation of Codon Adaption Index
dependent packages 1total releases 8latest release October 11, 2018most recent commit 2 years agopypi CAI} Downloads
The 10 Latest Releases In Bioinformatics Genetics Open Source Projects
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38latest release June 07, 2022most recent commit a year ago
Genipe ⭐ 26
Genome-wide imputation pipeline
total releases 13latest release February 11, 2021most recent commit 3 years ago
Molgenis ⭐ 106
MOLGENIS - for scientific data: management, exploration, integration and analysis.
dependent packages 39total releases 98latest release August 03, 2020most recent commit 4 months ago
Gslcore ⭐ 13
Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.
total releases 45latest release January 27, 2020most recent commit 3 years ago
Libflagstats ⭐ 11
Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
total releases 5latest release November 08, 2019most recent commit 4 years ago
Codonadaptationindex ⭐ 17
Python Implementation of Codon Adaption Index
dependent packages 1total releases 8latest release October 11, 2018most recent commit 2 years agopypi CAI} Downloads
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