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The Top 23 Bioinformatics Gene Expression Open Source Projects

Open source projects categorized as Bioinformatics Gene Expression
Categories > Data Processing > Bioinformatics
Categories > Gene Expression
Awesome Single Cell ⭐ 2,784
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
most recent commit 3 months ago
Salmon ⭐ 661
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
most recent commit 8 months ago
Awesome Expression Browser ⭐ 107
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
most recent commit a year ago
Shinygeo ⭐ 35
Gene Expression Omnibus Analysis with Shiny 🔬
most recent commit 2 years ago
Rnaseq_titration_results ⭐ 29
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
most recent commit a year ago
Volcano3d ⭐ 28
An R package to plot interactive three-way differential expression analysis
total releases 1most recent commit 8 months ago
Asap ⭐ 24
ASAP : Automated Single-cell Analysis Pipeline
most recent commit 4 months ago
Chromoformer ⭐ 24
The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
total releases 4most recent commit 8 months ago
Gedfn ⭐ 19
GEDFN: Graph-Embedded Deep Feedforward Network
most recent commit 5 years ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Neuroexpresso ⭐ 16
📊 Gene expression in neuroexpresso database
most recent commit a year ago
Pipernaseq ⭐ 16
A comprehensive pipeline for RNAseq data analysis
most recent commit 5 months ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 6most recent commit 2 years ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 2most recent commit 2 years ago
Tissuumapscore ⭐ 12
TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaps can be used as a web service or locally in your computer, and allows users to share regions of interest and local statistics.
most recent commit a year ago
Circompara ⭐ 12
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
most recent commit 4 years ago
Scinsight ⭐ 11
Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
most recent commit 2 years ago
Icodon ⭐ 10
iCodon customizes gene expression based on the codon composition
most recent commit 6 months ago
Pyreqtl ⭐ 9
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
total releases 2most recent commit 4 years ago
Adversarial Gene Expression ⭐ 8
Adversarial generation of gene expression data using Generative Adversarial Networks
most recent commit 2 years ago
Flexgsea R ⭐ 7
Flexible gene set enrichment analysis
most recent commit 3 years ago
Grex ⭐ 6
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
most recent commit 2 years ago
Tag Seq ⭐ 6
3’ Tag RNA-seq pipeline (Work in progress)
most recent commit 3 years ago
The 6 Latest Releases In Bioinformatics Gene Expression Open Source Projects
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 6latest release October 08, 2022most recent commit 2 years ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 2latest release March 30, 2021most recent commit 2 years ago
Volcano3d ⭐ 28
An R package to plot interactive three-way differential expression analysis
total releases 1latest release June 04, 2020most recent commit 8 months ago
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