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The Top 16 Bioinformatics Fastq Ngs Open Source Projects

Open source projects categorized as Bioinformatics Fastq Ngs
Categories > Data Processing > Bioinformatics
Categories > Fastq
Categories > Science > Ngs
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 6 months ago
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Afterqc ⭐ 157
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
most recent commit 6 years ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5most recent commit a year ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Mutscan ⭐ 127
Detect and visualize target mutations by scanning FastQ files directly
most recent commit 2 years ago
Isoquant ⭐ 98
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
most recent commit 3 months ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 4 months ago
Opengene.jl ⭐ 61
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
most recent commit 2 years ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Cfdnapattern ⭐ 42
Pattern Recognition for Cell-free DNA
most recent commit 6 years ago
Faster ⭐ 28
A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
most recent commit 3 months ago
Fusiondirect.jl ⭐ 23
(No maintenance) Detect gene fusion directly from raw fastq files
most recent commit 7 years ago
Fastqwiper ⭐ 9
An ensamble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired reads, and fix reads interleaving.
total releases 27most recent commit 5 months ago
Fonda ⭐ 7
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
most recent commit 2 years ago
Rs_demultiplex ⭐ 7
Simple demultiplexing of FASTQ, one oligo (barcode) at a time
most recent commit 2 years ago
The 3 Latest Releases In Bioinformatics Fastq Ngs Open Source Projects
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5latest release September 19, 2022most recent commit a year ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1latest release December 15, 2021most recent commit 6 months ago
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