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The Top 16 Docker Workflow Bioinformatics Open Source Projects

Open source projects categorized as Docker Workflow Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Virtualization > Docker
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250most recent commit 3 months ago
Cromwell ⭐ 944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
total releases 37most recent commit 3 months ago
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9most recent commit 3 months ago
Sarek ⭐ 126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
most recent commit 4 years ago
Dockstore ⭐ 113
Our VM/Docker sharing infrastructure and management component
most recent commit 3 months ago
Butler ⭐ 68
Butler is a framework for running scientific workflows on public and academic clouds.
most recent commit 4 years ago
Workflows ⭐ 28
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
most recent commit 3 months ago
Hotsub ⭐ 23
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
total releases 22most recent commit 5 years ago
Docker4seq ⭐ 18
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
most recent commit 7 months ago
Cookiecutter ⭐ 18
DEPRECIATED! Please use nf-core/tools instead
most recent commit 6 years ago
Galaksio ⭐ 17
An easy-to-use way for running Galaxy workflows.
most recent commit 4 years ago
Pomashiny ⭐ 11
🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
most recent commit a year ago
Containerinception ⭐ 6
Gerber: Generalized Easy Reproducible Bioinformatics Environment wRapper
most recent commit 6 years ago
Dockflow ⭐ 6
Containerize Bioconductor Workflows
most recent commit 5 years ago
Wobidisco ⭐ 5
Workflows Bioinformatics and Discoballs: The Biokepiverse
most recent commit 7 years ago
Nf Repeatmasking ⭐ 5
Nextflow workflow for automatic repeat detection, classification and masking
most recent commit 6 years ago
The 4 Latest Releases In Docker Workflow Bioinformatics Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9latest release September 21, 2023most recent commit 3 months ago
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