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The Top 23 Python Docker Bioinformatics Open Source Projects

Open source projects categorized as Python Docker Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Virtualization > Docker
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18most recent commit 5 months agopypi redun} Downloads
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9most recent commit 3 months ago
Plip ⭐ 320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
dependent packages 1total releases 25most recent commit 8 months agopypi plip} Downloads
Hicexplorer ⭐ 197
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
most recent commit 5 months ago
Run_dbcan ⭐ 109
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
total releases 17most recent commit 3 months ago
Instrain ⭐ 104
Bioinformatics program inStrain
total releases 59most recent commit 8 months ago
Plant Seg ⭐ 81
A tool for cell instance aware segmentation in densely packed 3D volumetric images
most recent commit 3 months ago
Butler ⭐ 68
Butler is a framework for running scientific workflows on public and academic clouds.
most recent commit 4 years ago
Tibanna ⭐ 68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
dependent packages 1total releases 280most recent commit 4 months agopypi tibanna} Downloads
Uta ⭐ 59
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
most recent commit 3 months ago
Balsamic ⭐ 40
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
most recent commit 3 months ago
Deepinteract ⭐ 33
A geometric deep learning pipeline for predicting protein interface contacts.
total releases 9most recent commit 2 years ago
Bisqueucsb ⭐ 33
An ML Platform for storing, analyzing, and visualizing your data all in the browser.
total releases 2most recent commit 5 months ago
Rnacentral Webcode ⭐ 25
RNAcentral website source code
most recent commit 5 months ago
Staphb_toolkit ⭐ 23
Python Toolkit for using containerized programs in either Singularity or Docker
most recent commit a year ago
Zika Pipeline ⭐ 19
The Zika bioinformatics pipeline
most recent commit 4 years ago
Lifelike ⭐ 18
Turning big data into contextualized knowledge. Lifelike is a modern application platform for data extraction, analysis and visualization.
most recent commit 7 months ago
Vesselexpress ⭐ 17
🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
most recent commit a year ago
Parkour2 ⭐ 16
Parkour2: Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻
most recent commit 3 months ago
Metasub_cap ⭐ 16
A comprehensive pipeline for short read metagenomic data
most recent commit 4 years ago
Fr3d Python ⭐ 14
Python implementation of the FR3D software for searching and annotating RNA 3D structures
most recent commit 5 months ago
Chronqc ⭐ 13
Manuscript describing ChronQC is now available online in Bioinformatics
most recent commit 5 years ago
Tostadas ⭐ 10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
most recent commit 5 months ago
The 3 Most Depended On Python Docker Bioinformatics Open Source Projects
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18latest release November 12, 2023most recent commit 5 months agopypi redun} Downloads
The 10 Latest Releases In Python Docker Bioinformatics Open Source Projects
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18latest release November 12, 2023most recent commit 5 months agopypi redun} Downloads
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9latest release September 21, 2023most recent commit 3 months ago
Instrain ⭐ 104
Bioinformatics program inStrain
total releases 59latest release August 25, 2023most recent commit 8 months ago
Bisqueucsb ⭐ 33
An ML Platform for storing, analyzing, and visualizing your data all in the browser.
total releases 2latest release March 17, 2022most recent commit 5 months ago
Deepinteract ⭐ 33
A geometric deep learning pipeline for predicting protein interface contacts.
total releases 9latest release January 20, 2022most recent commit 2 years ago
Htsinfer ⭐ 7
HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data
total releases 1latest release June 04, 2020most recent commit 3 months ago
Pygmql ⭐ 9
Python Library for data analysis based on GMQL
total releases 16latest release June 19, 2019most recent commit 2 years ago
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