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The Top 23 Bioinformatics Dna Open Source Projects

Open source projects categorized as Bioinformatics Dna
Categories > Data Processing > Bioinformatics
Categories > Science > Dna
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58most recent commit 3 months agopypi biopython} Downloads
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Khmer ⭐ 729
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
dependent packages 7total releases 18most recent commit 2 years agopypi khmer} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18most recent commit 3 years agopypi google-nucleus} Downloads
Poly ⭐ 620
A Go package for engineering organisms.
most recent commit 3 months ago
Dnafeaturesviewer ⭐ 500
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30most recent commit 6 months agopypi dna-features-viewer} Downloads
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86most recent commit 3 months agopypi pyfaidx} Downloads
Bismark ⭐ 335
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
most recent commit 7 months ago
Bio.jl ⭐ 256
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
most recent commit 8 months ago
Lightdock ⭐ 234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 3 months ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68most recent commit 5 months agopypi pyfastx} Downloads
Janggu ⭐ 205
Deep learning infrastructure for genomics
total releases 19most recent commit 3 years ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Dnachisel ⭐ 168
✏️ A versatile DNA sequence optimizer
dependent packages 7total releases 40most recent commit a year agopypi dnachisel} Downloads
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Pydna ⭐ 140
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
dependent packages 7total releases 110most recent commit 4 months agopypi pydna} Downloads
Dnanalyzer ⭐ 122
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
most recent commit 5 months ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38most recent commit a year ago
Eager ⭐ 112
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
most recent commit 3 months ago
Buddysuite ⭐ 105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
total releases 18most recent commit 2 years ago
Fastq.bio ⭐ 93
An interactive web tool for quality control of DNA sequencing data
most recent commit a year ago
The 10 Most Depended On Bioinformatics Dna Open Source Projects
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months agopypi biopython} Downloads
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Dnafeaturesviewer ⭐ 500
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30latest release November 01, 2023most recent commit 6 months agopypi dna-features-viewer} Downloads
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Dnachisel ⭐ 168
:pencil2: A versatile DNA sequence optimizer
dependent packages 7total releases 40latest release May 05, 2022most recent commit a year agopypi dnachisel} Downloads
Khmer ⭐ 729
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
dependent packages 7total releases 18latest release December 15, 2021most recent commit 2 years agopypi khmer} Downloads
Bionode Seq ⭐ 7
Module for DNA, RNA and protein sequences manipulation
dependent packages 4total releases 1latest release September 02, 2014most recent commit 7 years agonpm bionode-seq} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18latest release August 31, 2021most recent commit 3 years agopypi google-nucleus} Downloads
The 10 Latest Releases In Bioinformatics Dna Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Nimna ⭐ 8
DNA/RNA folding in Nim
latest release December 08, 2023most recent commit 6 years ago
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Dnafeaturesviewer ⭐ 500
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30latest release November 01, 2023most recent commit 6 months agopypi dna-features-viewer} Downloads
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months agopypi pyfaidx} Downloads
Pydamage ⭐ 7
Damage parameter estimation for ancient DNA
total releases 14latest release September 01, 2023most recent commit 8 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months agopypi biopython} Downloads
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