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The Top 23 Python Data Science Bioinformatics Open Source Projects

Open source projects categorized as Python Data Science Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Data Processing > Data Science
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174most recent commit 3 months agopypi dash} Downloads
Scanpy ⭐ 1,753
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77most recent commit 7 hours agopypi scanpy} Downloads
Awesome ⭐ 565
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
most recent commit 7 months ago
Dash Cytoscape ⭐ 555
Interactive network visualization in Python and Dash, powered by Cytoscape.js
dependent packages 2total releases 9most recent commit 3 months agonpm dash-cytoscape} Downloads
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18most recent commit 5 months agopypi redun} Downloads
Histolab ⭐ 315
Library for Digital Pathology Image Processing
total releases 21most recent commit 3 months ago
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4most recent commit 3 months ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43most recent commit 3 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32most recent commit 4 months agopypi cellrank} Downloads
Harmonypy ⭐ 116
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
dependent packages 14total releases 8most recent commit a year agopypi harmonypy} Downloads
Decoupler Py ⭐ 112
Python package to perform enrichment analysis from omics data.
dependent packages 3total releases 10most recent commit 3 months agopypi decoupler} Downloads
Python_biologist ⭐ 101
Python Programming for Biologists
most recent commit 7 months ago
Tutorial ⭐ 94
Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)
most recent commit 3 months ago
Terpene Profile Parser For Cannabis Strains ⭐ 93
Parser and database to index the terpene profile of different strains of Cannabis from online databases
most recent commit a year ago
Tiledb Vcf ⭐ 79
Efficient variant-call data storage and retrieval library using the TileDB storage library.
most recent commit 3 months ago
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18most recent commit 3 months agopypi cogent3} Downloads
Dash Tools ⭐ 73
DashTools - Plotly Dash Command Line Tools - Create, Run and Deploy Templated Python Apps from Terminal
total releases 48most recent commit 6 months ago
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9most recent commit 4 months agopypi glycowork} Downloads
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3most recent commit 4 months agopypi oxbow} Downloads
Orthoevolution ⭐ 28
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
total releases 2most recent commit a year ago
Self Study ⭐ 28
My Self-Study Room: keep tidy and lightweight
most recent commit a year ago
Kg4sl ⭐ 25
Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network (GNN)-based model that uses knowledge graph for SL prediction.
most recent commit 9 months ago
Ai For Bio ⭐ 21
A free and collaborative space for Machine Learning applied to Biology
most recent commit 3 months ago
The 10 Most Depended On Python Data Science Bioinformatics Open Source Projects
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Scanpy ⭐ 1,753
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77latest release October 31, 2023most recent commit 7 hours agopypi scanpy} Downloads
Harmonypy ⭐ 116
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
dependent packages 14total releases 8latest release November 23, 2022most recent commit a year agopypi harmonypy} Downloads
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Decoupler Py ⭐ 112
Python package to perform enrichment analysis from omics data.
dependent packages 3total releases 10latest release August 31, 2023most recent commit 3 months agopypi decoupler} Downloads
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18latest release September 22, 2023most recent commit 3 months agopypi cogent3} Downloads
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Mbpls ⭐ 10
(Multiblock) Partial Least Squares Regression for Python
dependent packages 2total releases 15latest release October 30, 2018most recent commit 4 years agopypi mbpls} Downloads
Dash Cytoscape ⭐ 555
Interactive network visualization in Python and Dash, powered by Cytoscape.js
dependent packages 2total releases 9latest release May 25, 2021most recent commit 3 months agonpm dash-cytoscape} Downloads
The 10 Latest Releases In Python Data Science Bioinformatics Open Source Projects
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4latest release December 04, 2023most recent commit 3 months ago
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18latest release November 12, 2023most recent commit 5 months agopypi redun} Downloads
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Scanpy ⭐ 1,753
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77latest release October 31, 2023most recent commit 7 hours agopypi scanpy} Downloads
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18latest release September 22, 2023most recent commit 3 months agopypi cogent3} Downloads
Decoupler Py ⭐ 112
Python package to perform enrichment analysis from omics data.
dependent packages 3total releases 10latest release August 31, 2023most recent commit 3 months agopypi decoupler} Downloads
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