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The Top 23 Data Science Bioinformatics Open Source Projects

Open source projects categorized as Data Science Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Data Processing > Data Science
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174most recent commit 3 months agopypi dash} Downloads
Scanpy ⭐ 1,729
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77most recent commit 11 days agopypi scanpy} Downloads
Getting Started With Genomics Tools And Resources ⭐ 991
Unix, R and python tools for genomics and data science
most recent commit 3 months ago
Reflow ⭐ 946
A language and runtime for distributed, incremental data processing in the cloud
total releases 2most recent commit 6 months ago
Awesome ⭐ 565
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
most recent commit 7 months ago
Dash Cytoscape ⭐ 555
Interactive network visualization in Python and Dash, powered by Cytoscape.js
dependent packages 2total releases 9most recent commit 3 months agonpm dash-cytoscape} Downloads
Anndata ⭐ 495
Annotated data.
dependent packages 399total releases 78most recent commit 7 days agopypi anndata} Downloads
Dash.jl ⭐ 475
Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.
most recent commit 3 months ago
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18most recent commit 5 months agopypi redun} Downloads
Simple Gpu ⭐ 432
🦒 Functional WebGPU
most recent commit 3 months ago
Histolab ⭐ 315
Library for Digital Pathology Image Processing
total releases 21most recent commit 3 months ago
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4most recent commit 3 months ago
Truvari ⭐ 284
Structural variant toolkit for VCFs
total releases 23most recent commit 8 days ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43most recent commit 3 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32most recent commit 4 months agopypi cellrank} Downloads
Deep Rules ⭐ 198
Ten Quick Tips for Deep Learning in Biology
most recent commit 2 years ago
Pecan ⭐ 193
The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
most recent commit 3 months ago
Pandora ⭐ 127
PANDORA Advanced Machine Learning for Data Integration, Analysis, and Insightful Discoveries in Health and Disease 💻
most recent commit 5 months ago
Harmonypy ⭐ 116
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
dependent packages 14total releases 8most recent commit a year agopypi harmonypy} Downloads
Decoupler Py ⭐ 112
Python package to perform enrichment analysis from omics data.
dependent packages 3total releases 10most recent commit 3 months agopypi decoupler} Downloads
Python_biologist ⭐ 101
Python Programming for Biologists
most recent commit 7 months ago
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18most recent commit 2 years agonuget BioFSharp} Downloads
Tutorial ⭐ 94
Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)
most recent commit 3 months ago
The 10 Most Depended On Data Science Bioinformatics Open Source Projects
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Scanpy ⭐ 1,729
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77latest release October 31, 2023most recent commit 11 days agopypi scanpy} Downloads
Anndata ⭐ 495
Annotated data.
dependent packages 399total releases 78latest release October 31, 2023most recent commit 7 days agopypi anndata} Downloads
Harmonypy ⭐ 116
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
dependent packages 14total releases 8latest release November 23, 2022most recent commit a year agopypi harmonypy} Downloads
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4latest release May 29, 2016most recent commit 6 years ago
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18latest release May 11, 2022most recent commit 2 years agonuget BioFSharp} Downloads
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Lore ⭐ 21
WebGL engine for (big) data visualization.
dependent packages 3total releases 51latest release May 26, 2022most recent commit 2 years agonpm lore-engine} Downloads
Decoupler Py ⭐ 112
Python package to perform enrichment analysis from omics data.
dependent packages 3total releases 10latest release August 31, 2023most recent commit 3 months agopypi decoupler} Downloads
The 10 Latest Releases In Data Science Bioinformatics Open Source Projects
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4latest release December 04, 2023most recent commit 3 months ago
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18latest release November 12, 2023most recent commit 5 months agopypi redun} Downloads
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Scanpy ⭐ 1,729
Single-cell analysis in Python. Scales to >1M cells.
dependent packages 440total releases 77latest release October 31, 2023most recent commit 11 days agopypi scanpy} Downloads
Anndata ⭐ 495
Annotated data.
dependent packages 399total releases 78latest release October 31, 2023most recent commit 7 days agopypi anndata} Downloads
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18latest release September 22, 2023most recent commit 3 months agopypi cogent3} Downloads
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