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The Top 20 Workflow Bioinformatics Cwl Open Source Projects

Open source projects categorized as Workflow Bioinformatics Cwl
Categories > Data Processing > Bioinformatics
Cromwell ⭐ 944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
total releases 37most recent commit 3 months ago
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9most recent commit 3 months ago
Dockstore ⭐ 113
Our VM/Docker sharing infrastructure and management component
most recent commit 3 months ago
Rabix ⭐ 104
[Historical] Reproducible Analyses for Bioinformatics
most recent commit 5 years ago
Cwl Svg ⭐ 72
A library for generating an interactive SVG visualization of CWL workflows
dependent packages 4total releases 74most recent commit a year agonpm cwl-svg} Downloads
Awe ⭐ 62
workflow and resource management system for bioinformatics data analysis
total releases 43most recent commit 4 years ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62most recent commit 8 months agopypi janis-pipelines.core} Downloads
Workflows ⭐ 28
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
most recent commit 3 months ago
Gdc Workflow Overview ⭐ 23
Overview of GDC Harmonization Workflows
most recent commit a year ago
Hotsub ⭐ 23
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
total releases 22most recent commit 5 years ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Gdc Dnaseq Cwl ⭐ 21
CWL for GDC DNASeq workflows
most recent commit 9 months ago
Workflows ⭐ 18
Bioinformatics curated workflows that use Biocontainers tools
most recent commit 5 years ago
Sevenbridges Cwl ⭐ 14
Seven Bridges Python library for programatic generation of CWL workflows.
most recent commit 3 years ago
Clihelpparser ⭐ 13
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
most recent commit 3 years ago
Workflows ⭐ 12
CWL based Bioinformatics Workflows
total releases 11most recent commit 3 months ago
Kf Somatic Workflow ⭐ 11
🔬 Somatic workflow for Kids-First
most recent commit 3 months ago
Kf Alignment Workflow ⭐ 9
🔬 Alignment workflow for Kids-First DRC
most recent commit 3 months ago
Containerinception ⭐ 6
Gerber: Generalized Easy Reproducible Bioinformatics Environment wRapper
most recent commit 6 years ago
Kf Jointgenotyping Workflow ⭐ 6
🔬 Joint genotyping workflow for Kids-First DRC
most recent commit a year ago
The 2 Most Depended On Workflow Bioinformatics Cwl Open Source Projects
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
Cwl Svg ⭐ 72
A library for generating an interactive SVG visualization of CWL workflows
dependent packages 4total releases 74latest release January 17, 2023most recent commit a year agonpm cwl-svg} Downloads
The 7 Latest Releases In Workflow Bioinformatics Cwl Open Source Projects
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9latest release September 21, 2023most recent commit 3 months ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
Cwl Svg ⭐ 72
A library for generating an interactive SVG visualization of CWL workflows
dependent packages 4total releases 74latest release January 17, 2023most recent commit a year agonpm cwl-svg} Downloads
Awe ⭐ 62
workflow and resource management system for bioinformatics data analysis
total releases 43latest release May 13, 2019most recent commit 4 years ago
Workflows ⭐ 12
CWL based Bioinformatics Workflows
total releases 11latest release December 13, 2018most recent commit 3 months ago
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