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The Top 23 Bioinformatics Computational Biology Open Source Projects

Open source projects categorized as Bioinformatics Computational Biology
Categories > Data Processing > Bioinformatics
Categories > Computational Biology
Cs Video Courses ⭐ 62,887
List of Computer Science courses with video lectures.
most recent commit 3 months ago
Awesome Deepbio ⭐ 1,467
A curated list of awesome deep learning applications in the field of computational biology
most recent commit 5 years ago
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29most recent commit 4 months agopypi graphein} Downloads
Scikit Bio ⭐ 833
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
most recent commit 5 days ago
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20most recent commit 7 months agopypi biopandas} Downloads
Seq ⭐ 624
A high-performance, Pythonic language for bioinformatics
most recent commit a year ago
Poly ⭐ 620
A Go package for engineering organisms.
most recent commit 3 months ago
Dash Cytoscape ⭐ 555
Interactive network visualization in Python and Dash, powered by Cytoscape.js
dependent packages 2total releases 9most recent commit 3 months agonpm dash-cytoscape} Downloads
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52most recent commit 3 months agopypi biotite} Downloads
Cobrapy ⭐ 414
COBRApy is a package for constraint-based modeling of metabolic networks.
dependent packages 84total releases 101most recent commit 6 months agopypi cobra} Downloads
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4most recent commit 3 months ago
Deep Rules ⭐ 198
Ten Quick Tips for Deep Learning in Biology
most recent commit 2 years ago
Soapdenovo2 ⭐ 197
Next generation sequencing reads de novo assembler.
most recent commit 5 months ago
Kent ⭐ 197
UCSC Genome Browser source tree. Stable branch: "beta".
most recent commit 3 months ago
Biosyntax ⭐ 184
Syntax highlighting for computational biology
most recent commit 3 years ago
Metagem ⭐ 155
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
most recent commit 4 months ago
Indra ⭐ 154
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
dependent packages 7total releases 29most recent commit 3 months agopypi indra} Downloads
Clairvoyante ⭐ 142
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
most recent commit 3 years ago
Souporcell ⭐ 134
Clustering scRNAseq by genotypes
most recent commit 6 months ago
Dna2vec ⭐ 103
dna2vec: Consistent vector representations of variable-length k-mers
most recent commit 4 years ago
Python_biologist ⭐ 101
Python Programming for Biologists
most recent commit 7 months ago
Riddle ⭐ 91
Race and ethnicity Imputation from Disease history with Deep LEarning
most recent commit 6 years ago
Czid Web ⭐ 75
Infectious Disease Sequencing Platform
most recent commit 3 months ago
The 10 Most Depended On Bioinformatics Computational Biology Open Source Projects
Cobrapy ⭐ 414
COBRApy is a package for constraint-based modeling of metabolic networks.
dependent packages 84total releases 101latest release October 31, 2023most recent commit 6 months agopypi cobra} Downloads
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 3 months agopypi biotite} Downloads
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20latest release August 28, 2023most recent commit 7 months agopypi biopandas} Downloads
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4latest release May 29, 2016most recent commit 6 years ago
Itolapi ⭐ 31
Python API for the Interactive Tree of Life (iTOL)
dependent packages 4total releases 20latest release January 15, 2023most recent commit 3 months agopypi itolapi} Downloads
Dash Cytoscape ⭐ 555
Interactive network visualization in Python and Dash, powered by Cytoscape.js
dependent packages 2total releases 9latest release May 25, 2021most recent commit 3 months agonpm dash-cytoscape} Downloads
Lexicon ⭐ 22
Data visualization library for creating interactive graphs and dashboards for bioinformatics etc.
dependent packages 2total releases 3latest release January 25, 2018most recent commit 6 years agonpm d3-lexicon} Downloads
Toolchest Client Python ⭐ 13
Toolchest Python client
dependent packages 1total releases 84latest release January 26, 2023most recent commit a year agopypi toolchest-client} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
The 10 Latest Releases In Bioinformatics Computational Biology Open Source Projects
Dance ⭐ 284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
total releases 4latest release December 04, 2023most recent commit 3 months ago
Cobrapy ⭐ 414
COBRApy is a package for constraint-based modeling of metabolic networks.
dependent packages 84total releases 101latest release October 31, 2023most recent commit 6 months agopypi cobra} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 3 months agopypi biotite} Downloads
Slow5 Rs ⭐ 5
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
dependent packages 1total releases 11latest release September 04, 2023most recent commit 8 months agocargo slow5lib-sys} Downloads
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20latest release August 28, 2023most recent commit 7 months agopypi biopandas} Downloads
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9latest release August 27, 2023most recent commit 4 months agopypi glycowork} Downloads
Scphylo Tools ⭐ 5
a python toolkit for single-cell tumor phylogenetic analysis
total releases 5latest release July 26, 2023most recent commit 4 months ago
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